Variant report

Variant	rs10427765
Chromosome Location	chr22:30925032-30925033
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12158119	1.00[AMR][1000 genomes]
rs12159979	1.00[AMR][1000 genomes]
rs16988763	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34765878	1.00[AMR][1000 genomes]
rs5997635	1.00[AMR][1000 genomes]
rs5997644	1.00[AMR][1000 genomes]
rs5997649	1.00[AMR][1000 genomes]
rs73394240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73881452	1.00[AMR][1000 genomes]
rs73881454	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829171	chr22:30598030-31043578	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30914400-30933400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:30918400-30926600	Weak transcription	Gastric	stomach
3	chr22:30922200-30927800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr22:30924800-30925400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr22:30925000-30925200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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