Variant report

Variant	rs10427855
Chromosome Location	chr22:34110165-34110166
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11914217	1.00[AMR][1000 genomes]
rs12158217	1.00[AMR][1000 genomes]
rs12168206	1.00[AMR][1000 genomes]
rs130838	1.00[AMR][1000 genomes]
rs16992586	1.00[AMR][1000 genomes]
rs16992591	1.00[AMR][1000 genomes]
rs16992612	1.00[AMR][1000 genomes]
rs16992638	1.00[AMR][1000 genomes]
rs16992713	1.00[AMR][1000 genomes]
rs16992725	1.00[AMR][1000 genomes]
rs16992766	1.00[AMR][1000 genomes]
rs16992772	1.00[AMR][1000 genomes]
rs16992774	1.00[AMR][1000 genomes]
rs16992778	1.00[AMR][1000 genomes]
rs16992847	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16992860	1.00[AMR][1000 genomes]
rs16992861	1.00[AMR][1000 genomes]
rs16992896	1.00[AMR][1000 genomes]
rs1869937	1.00[AMR][1000 genomes]
rs1869938	1.00[AMR][1000 genomes]
rs57806024	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934109	chr22:33722066-34339500	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv531588	chr22:33776857-34150188	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1055791	chr22:33822226-34159536	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	esv2763261	chr22:33831348-34288389	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv917167	chr22:33852676-34137036	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1062832	chr22:33861531-34143295	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv544686	chr22:33861531-34143295	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1057450	chr22:33928913-34849012	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv934161	chr22:33979015-34118621	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv914990	chr22:34090440-34373293	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1055203	chr22:34098417-34196685	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv914991	chr22:34106384-34293516	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv459878	chr22:34106745-34226592	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv588936	chr22:34106745-34226592	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv1060684	chr22:34108462-34140653	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:34091600-34115800	Weak transcription	Pancreas	Pancrea
2	chr22:34097600-34110200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr22:34097600-34114600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr22:34098200-34110600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr22:34103200-34110600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr22:34104200-34118800	Weak transcription	Right Ventricle	heart
7	chr22:34105600-34133400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr22:34106400-34110200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr22:34107600-34111400	Weak transcription	Left Ventricle	heart
10	chr22:34107600-34116200	Weak transcription	Stomach Mucosa	stomach
11	chr22:34109400-34110400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr22:34109400-34110800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr22:34109400-34112000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
14	chr22:34109400-34112400	Weak transcription	HepG2	liver
15	chr22:34109600-34111000	ZNF genes & repeats	Fetal Stomach	stomach
16	chr22:34109800-34110800	ZNF genes & repeats	Liver	Liver
17	chr22:34109800-34111000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
18	chr22:34109800-34111200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr22:34109800-34111200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr22:34110000-34110200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr22:34110000-34110400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
22	chr22:34110000-34110400	ZNF genes & repeats	Ovary	ovary
23	chr22:34110000-34110800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
24	chr22:34110000-34110800	ZNF genes & repeats	Aorta	Aorta
25	chr22:34110000-34111000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr22:34110000-34111200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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