Variant report

Variant	rs10428305
Chromosome Location	chr4:143355242-143355243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1155075	0.90[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs12499068	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1353624	0.84[GIH][hapmap]
rs1391092	0.81[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1497390	0.90[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs1497391	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs1497393	0.84[GIH][hapmap];0.83[JPT][hapmap]
rs1497396	0.89[JPT][hapmap]
rs17658809	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2200841	0.84[GIH][hapmap];0.83[JPT][hapmap]
rs2840094	0.86[ASN][1000 genomes]
rs3756125	0.90[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs3775719	0.85[ASN][1000 genomes]
rs62328324	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6842192	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs7666932	0.84[GIH][hapmap];0.83[JPT][hapmap]
rs931636	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs977617	0.81[CEU][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv830100	chr4:143216951-143393305	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143338600-143366600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143339000-143355400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:143350000-143355400	Weak transcription	Fetal Heart	heart
4	chr4:143350000-143356200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:143350000-143356200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr4:143350200-143356000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:143351200-143364800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:143351200-143371200	Weak transcription	Pancreas	Pancrea
9	chr4:143351600-143356200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr4:143352400-143356800	Weak transcription	Left Ventricle	heart
11	chr4:143352400-143359400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:143353000-143360800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:143354000-143355800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr4:143354400-143355800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr4:143354600-143356200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr4:143354800-143355800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr4:143354800-143356000	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr4:143355000-143355600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:143355200-143356800	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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