Variant report

Variant	rs10428864
Chromosome Location	chr6:4225537-4225538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10223886	0.84[EUR][1000 genomes]
rs11961149	0.88[EUR][1000 genomes]
rs11970375	0.88[EUR][1000 genomes]
rs11970430	0.88[EUR][1000 genomes]
rs1591412	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17500205	0.83[EUR][1000 genomes]
rs17538963	0.89[EUR][1000 genomes]
rs17565229	0.84[EUR][1000 genomes]
rs1832060	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2210761	0.89[EUR][1000 genomes]
rs2210762	0.89[EUR][1000 genomes]
rs2326473	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4255019	0.89[EUR][1000 genomes]
rs4256473	0.89[EUR][1000 genomes]
rs4317452	0.89[EUR][1000 genomes]
rs4354197	0.89[EUR][1000 genomes]
rs4443539	0.89[EUR][1000 genomes]
rs4475361	0.89[EUR][1000 genomes]
rs4526241	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4596533	0.87[EUR][1000 genomes]
rs4629733	0.87[EUR][1000 genomes]
rs57509474	0.89[EUR][1000 genomes]
rs58402712	0.89[EUR][1000 genomes]
rs59706955	0.89[EUR][1000 genomes]
rs60023788	0.89[EUR][1000 genomes]
rs61604146	0.89[EUR][1000 genomes]
rs6597046	0.88[EUR][1000 genomes]
rs6597047	0.88[EUR][1000 genomes]
rs6597048	0.88[EUR][1000 genomes]
rs6916181	0.89[EUR][1000 genomes]
rs6922330	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6931784	0.89[EUR][1000 genomes]
rs73356806	0.89[EUR][1000 genomes]
rs73358820	0.89[EUR][1000 genomes]
rs73358823	0.89[EUR][1000 genomes]
rs73358854	0.89[EUR][1000 genomes]
rs73360930	0.88[EUR][1000 genomes]
rs73360933	0.88[EUR][1000 genomes]
rs73360945	0.88[EUR][1000 genomes]
rs7754298	0.84[EUR][1000 genomes]
rs7763657	0.83[EUR][1000 genomes]
rs7763789	0.87[EUR][1000 genomes]
rs7765457	0.87[EUR][1000 genomes]
rs913405	0.84[EUR][1000 genomes]
rs9328227	0.89[EUR][1000 genomes]
rs9328229	0.89[EUR][1000 genomes]
rs9328230	0.84[EUR][1000 genomes]
rs9328231	0.88[EUR][1000 genomes]
rs9328232	0.88[EUR][1000 genomes]
rs9328233	0.88[EUR][1000 genomes]
rs9328236	0.88[EUR][1000 genomes]
rs9502148	0.89[EUR][1000 genomes]
rs9502149	0.89[EUR][1000 genomes]
rs9502150	0.89[EUR][1000 genomes]
rs9502151	0.87[EUR][1000 genomes]
rs9502152	0.87[EUR][1000 genomes]
rs9502153	0.85[EUR][1000 genomes]
rs9502154	0.85[EUR][1000 genomes]
rs9502157	0.88[EUR][1000 genomes]
rs9502158	0.88[EUR][1000 genomes]
rs9502159	0.88[EUR][1000 genomes]
rs9502160	0.87[EUR][1000 genomes]
rs9502161	0.82[EUR][1000 genomes]
rs9502163	0.83[EUR][1000 genomes]
rs9503948	0.89[EUR][1000 genomes]
rs9503953	0.89[EUR][1000 genomes]
rs9503982	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9503983	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9503984	0.97[EUR][1000 genomes]
rs9503985	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9503993	0.88[EUR][1000 genomes]
rs9503994	0.88[EUR][1000 genomes]
rs9503995	0.88[EUR][1000 genomes]
rs9503996	0.89[EUR][1000 genomes]
rs9504005	0.88[EUR][1000 genomes]
rs9504006	0.88[EUR][1000 genomes]
rs9504007	0.87[EUR][1000 genomes]
rs9504008	0.87[EUR][1000 genomes]
rs9504009	0.87[EUR][1000 genomes]
rs9504010	0.87[EUR][1000 genomes]
rs9504022	0.88[EUR][1000 genomes]
rs9504025	0.84[EUR][1000 genomes]
rs9504033	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1030104	chr6:4062894-4240269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv2422231	chr6:4100333-4233454	Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv2422457	chr6:4100333-4377396	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4222000-4225600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:4223800-4226000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:4224000-4225800	Enhancers	Fetal Intestine Small	intestine
4	chr6:4224000-4226000	Enhancers	Fetal Intestine Large	intestine
5	chr6:4224200-4226000	Enhancers	Fetal Heart	heart
6	chr6:4224600-4226000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:4224800-4225600	Enhancers	K562	blood
8	chr6:4225000-4226000	Enhancers	Adipose Nuclei	Adipose
9	chr6:4225200-4225600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
10	chr6:4225200-4225800	Enhancers	Left Ventricle	heart
11	chr6:4225200-4225800	Enhancers	Stomach Mucosa	stomach
12	chr6:4225200-4226000	Enhancers	Gastric	stomach
13	chr6:4225400-4225600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:4225400-4225800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr6:4225400-4225800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr6:4225400-4225800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:4225400-4225800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:4225400-4225800	Enhancers	Fetal Muscle Trunk	muscle
19	chr6:4225400-4225800	Enhancers	Fetal Muscle Leg	muscle
20	chr6:4225400-4225800	Enhancers	Fetal Stomach	stomach
21	chr6:4225400-4225800	Enhancers	Placenta Amnion	Placenta Amnion
22	chr6:4225400-4225800	Flanking Active TSS	Rectal Smooth Muscle	rectum
23	chr6:4225400-4225800	Enhancers	Spleen	Spleen
24	chr6:4225400-4225800	Enhancers	HepG2	liver
25	chr6:4225400-4226000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr6:4225400-4226000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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