Variant report

Variant	rs10429870
Chromosome Location	chr1:224840799-224840800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224840003..224842948-chr1:224864305..224866677,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10915687	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10915698	0.88[CHB][hapmap]
rs10916655	0.85[CEU][hapmap]
rs12025142	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1369847	0.94[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs1436169	0.83[ASN][1000 genomes]
rs1436172	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs169888	0.84[JPT][hapmap]
rs2050626	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2050627	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2405516	0.93[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2897161	0.83[CHB][hapmap];0.83[CHD][hapmap]
rs298733	0.94[CHD][hapmap]
rs298735	1.00[CHB][hapmap];0.91[JPT][hapmap];0.99[ASN][1000 genomes]
rs298739	0.99[ASN][1000 genomes]
rs2993124	0.99[ASN][1000 genomes]
rs3012185	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4653402	0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4653404	0.83[ASN][1000 genomes]
rs4653591	0.86[ASN][1000 genomes]
rs4653592	0.94[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs9919286	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224828800-224853400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:224832200-224884400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:224832800-224869000	Weak transcription	Dnd41	blood
4	chr1:224833200-224874400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr1:224838400-224853200	Weak transcription	Psoas Muscle	Psoas
6	chr1:224839000-224840800	Enhancers	HMEC	breast
7	chr1:224839000-224840800	Enhancers	NHDF-Ad	bronchial
8	chr1:224839200-224840800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:224839400-224840800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:224839400-224840800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:224839600-224840800	Enhancers	NHEK	skin
12	chr1:224839800-224840800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:224839800-224840800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:224839800-224840800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:224839800-224840800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr1:224839800-224840800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr1:224839800-224840800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:224839800-224840800	Enhancers	HSMM	muscle
19	chr1:224839800-224841000	Enhancers	Pancreas	Pancrea
20	chr1:224840000-224840800	Enhancers	Esophagus	oesophagus
21	chr1:224840000-224840800	Enhancers	Spleen	Spleen
22	chr1:224840200-224840800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:224840200-224840800	Enhancers	Fetal Muscle Trunk	muscle
24	chr1:224840400-224841000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:224840600-224840800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr1:224840600-224840800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:224840600-224840800	Enhancers	HUVEC	blood vessel
28	chr1:224840600-224840800	Enhancers	NH-A	brain
29	chr1:224840600-224840800	Enhancers	NHLF	lung
30	chr1:224840600-224840800	Enhancers	Osteobl	bone

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