Variant report

Variant	rs10431400
Chromosome Location	chr12:87045411-87045412
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1030450	0.86[YRI][hapmap]
rs10444513	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10745430	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs10745432	0.94[JPT][hapmap]
rs10776992	0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs10858463	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs10858465	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs10858468	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs1159292	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12299021	0.94[JPT][hapmap]
rs1469383	0.83[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs1560015	0.93[ASN][1000 genomes]
rs1560016	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1863893	0.81[ASN][1000 genomes]
rs2016230	0.84[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs2059773	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2081817	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs2114893	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs2162670	1.00[CHB][hapmap];0.84[JPT][hapmap];0.92[YRI][hapmap]
rs2162673	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs2162674	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs2195230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2195231	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2406250	0.83[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs2406252	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2406254	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs2406335	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2559814	0.89[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2702774	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2702775	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4240751	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs4454789	0.80[ASN][1000 genomes]
rs4465427	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4583046	0.94[JPT][hapmap]
rs4842785	0.92[YRI][hapmap]
rs4842819	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs4842820	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs6538049	0.85[YRI][hapmap]
rs717681	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7314362	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7314413	0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7965979	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7973223	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7977253	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs9788070	1.00[YRI][hapmap]
rs981142	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs982037	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs994288	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899395	chr12:86813367-87177972	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv899396	chr12:86863041-87276957	ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv899398	chr12:86880442-87051310	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv899399	chr12:86880442-87177972	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv916604	chr12:86966256-87275268	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1049580	chr12:86966497-87354132	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv520577	chr12:87020377-87051310	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv1792918	chr12:87036082-87049966	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87042400-87052000	Weak transcription	A549	lung

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