Variant report

Variant	rs10431726
Chromosome Location	chr14:77945893-77945894
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10431633	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10431634	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1061629	0.87[AMR][1000 genomes]
rs11159259	0.85[AMR][1000 genomes]
rs11159262	0.88[AMR][1000 genomes]
rs11159263	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11159264	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11622359	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11622832	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11623826	0.81[AMR][1000 genomes]
rs11624068	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11624200	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11624990	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11625129	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11625365	0.81[AMR][1000 genomes]
rs11627385	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12433766	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12436593	0.82[AMR][1000 genomes]
rs12590773	0.88[AMR][1000 genomes]
rs12878121	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs147316	0.83[AMR][1000 genomes]
rs176773	0.81[AMR][1000 genomes]
rs176781	0.83[AMR][1000 genomes]
rs17824316	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2091916	0.83[AMR][1000 genomes]
rs2242619	0.85[AMR][1000 genomes]
rs2364156	0.83[AMR][1000 genomes]
rs4223	0.85[AMR][1000 genomes]
rs4369582	0.81[AMR][1000 genomes]
rs4899655	0.81[AMR][1000 genomes]
rs4903583	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4903584	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4903586	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6574372	0.81[AMR][1000 genomes]
rs7142380	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7146595	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7146784	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7250	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs760257	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8006688	0.87[AMR][1000 genomes]
rs8016070	0.82[AMR][1000 genomes]
rs8016576	0.81[AMR][1000 genomes]
rs8018711	0.83[AMR][1000 genomes]
rs963283	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10431726	SPTLC2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77936200-77948600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:77936400-77946000	Weak transcription	Brain Angular Gyrus	brain
3	chr14:77936600-77947200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:77940600-77948600	Weak transcription	Fetal Kidney	kidney
5	chr14:77942400-77949000	Weak transcription	Placenta	Placenta
6	chr14:77945000-77948800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:77945000-77951800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr14:77945400-77947200	Weak transcription	HepG2	liver

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