Variant report

Variant	rs10432482
Chromosome Location	chr2:178524519-178524520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11674779	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583688	chr2:178427640-178540293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178517200-178530800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:178524000-178524600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr2:178524000-178525000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:178524000-178525000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
5	chr2:178524000-178525200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr2:178524000-178525800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:178524200-178524600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:178524200-178524600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr2:178524200-178524800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr2:178524200-178525200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:178524200-178525200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
12	chr2:178524200-178525800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr2:178524400-178524800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:178524400-178524800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr2:178524400-178524800	Enhancers	Fetal Kidney	kidney
16	chr2:178524400-178525000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr2:178524400-178525000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr2:178524400-178525800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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