Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178960724..178963095-chr2:178966189..178968403,2	MCF-7	breast:
2	chr2:178959487..178962376-chr2:178976482..178978600,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155636	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10176475	0.94[JPT][hapmap]
rs11886139	0.83[JPT][hapmap]
rs11887974	0.89[JPT][hapmap]
rs11899905	0.89[JPT][hapmap]
rs12619532	0.85[CEU][hapmap]
rs13408924	0.88[JPT][hapmap]
rs1369515	0.89[JPT][hapmap]
rs1369517	0.94[JPT][hapmap]
rs1435571	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1435572	0.85[CEU][hapmap]
rs2163647	0.88[JPT][hapmap]
rs2217838	0.89[JPT][hapmap]
rs4300869	0.88[JPT][hapmap]
rs6709343	0.89[JPT][hapmap]
rs6710329	0.94[JPT][hapmap]
rs6714047	0.89[JPT][hapmap]
rs6726222	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6738461	0.85[JPT][hapmap]
rs736842	0.89[JPT][hapmap]
rs7583491	0.93[JPT][hapmap]
rs7586240	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9288014	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533377	chr2:178718801-178963463	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv583739	chr2:178942302-178993562	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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