Variant report
| Variant | rs10435366 |
|---|---|
| Chromosome Location | chr7:112016581-112016582 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:112013395..112014930-chr7:112015433..112017395,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000236232 | Chromatin interaction |
| ENSG00000232922 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11773464 | 0.82[CHB][hapmap];0.88[JPT][hapmap] |
| rs12113634 | 0.82[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs12154681 | 0.82[CHB][hapmap] |
| rs12154685 | 0.81[JPT][hapmap] |
| rs12537746 | 0.82[CHB][hapmap];0.88[JPT][hapmap] |
| rs12705817 | 0.82[CHB][hapmap];0.88[JPT][hapmap] |
| rs13236012 | 0.82[CHB][hapmap];0.87[JPT][hapmap] |
| rs17492150 | 0.95[MEX][hapmap] |
| rs2040728 | 0.96[ASN][1000 genomes] |
| rs2523032 | 0.96[ASN][1000 genomes] |
| rs2523042 | 0.97[ASN][1000 genomes] |
| rs2708593 | 0.88[YRI][hapmap] |
| rs2708600 | 0.95[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs2708601 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs4727766 | 0.88[JPT][hapmap] |
| rs4730524 | 0.81[JPT][hapmap] |
| rs4730533 | 0.92[ASN][1000 genomes] |
| rs6978767 | 0.88[JPT][hapmap] |
| rs727807 | 0.89[JPT][hapmap];0.86[MEX][hapmap] |
| rs736771 | 0.82[CHB][hapmap];0.88[JPT][hapmap] |
| rs7789649 | 0.95[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs960348 | 0.82[CHB][hapmap];0.88[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532335 | chr7:111411990-112054905 | Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv531436 | chr7:111856171-112585407 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 105 gene(s) | inside rSNPs | diseases |
| 3 | nsv1020212 | chr7:111944370-112032596 | Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv831097 | chr7:112000837-112113173 | Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 90 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
