Variant report

Variant	rs10435724
Chromosome Location	chr9:13034734-13034735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:13033734..13035793-chr9:13280439..13283221,2	K562	blood:
2	chr9:13034030..13034837-chr9:13088503..13089360,4	K562	blood:
3	chr9:13033916..13034844-chr9:13088403..13089550,10	MCF-7	breast:
4	chr9:13033933..13036265-chr9:13080318..13084279,3	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10435759	0.89[EUR][1000 genomes]
rs10756441	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10756442	0.88[ASN][1000 genomes]
rs10809878	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10809879	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10960889	0.91[ASN][1000 genomes]
rs10960911	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1360059	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4741268	0.88[CEU][hapmap]
rs4741270	0.81[EUR][1000 genomes]
rs7469846	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422212	chr9:12448789-13127738	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv892576	chr9:12925921-13093345	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv917331	chr9:12941193-13146852	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv892579	chr9:12954161-13120380	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1033313	chr9:12985981-13037413	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1023816	chr9:13008542-13064793	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13033800-13034800	Enhancers	Fetal Heart	heart
2	chr9:13034000-13034800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:13034000-13034800	Active TSS	Brain Cingulate Gyrus	brain
4	chr9:13034000-13034800	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr9:13034000-13034800	Active TSS	Stomach Smooth Muscle	stomach
6	chr9:13034000-13034800	Active TSS	A549	lung
7	chr9:13034000-13034800	Active TSS	NHLF	lung
8	chr9:13034000-13035000	Enhancers	HepG2	liver
9	chr9:13034000-13036400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr9:13034200-13034800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:13034200-13034800	Active TSS	Brain Angular Gyrus	brain
12	chr9:13034200-13034800	Active TSS	Colon Smooth Muscle	Colon
13	chr9:13034200-13034800	Active TSS	Hela-S3	cervix
14	chr9:13034200-13034800	Active TSS	NHDF-Ad	bronchial
15	chr9:13034200-13034800	Flanking Active TSS	Osteobl	bone
16	chr9:13034200-13035000	Flanking Active TSS	Liver	Liver
17	chr9:13034200-13035000	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr9:13034400-13034800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr9:13034400-13034800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:13034400-13034800	Active TSS	Fetal Muscle Trunk	muscle
21	chr9:13034400-13034800	Active TSS	Right Atrium	heart
22	chr9:13034400-13034800	Flanking Active TSS	HUVEC	blood vessel
23	chr9:13034600-13034800	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr9:13034600-13034800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:13034600-13034800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr9:13034600-13034800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:13034600-13034800	Active TSS	Adipose Nuclei	Adipose
28	chr9:13034600-13034800	Enhancers	Brain Germinal Matrix	brain
29	chr9:13034600-13034800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr9:13034600-13034800	Active TSS	Fetal Brain Male	brain
31	chr9:13034600-13034800	Enhancers	Fetal Brain Female	brain
32	chr9:13034600-13034800	Active TSS	Fetal Lung	lung
33	chr9:13034600-13034800	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr9:13034600-13034800	Enhancers	NH-A	brain
35	chr9:13034600-13034800	Flanking Active TSS	NHEK	skin
36	chr9:13034600-13035000	Enhancers	Fetal Stomach	stomach
37	chr9:13034600-13036000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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