Variant report

Variant	rs10437781
Chromosome Location	chr12:29154281-29154282
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:29149736..29151785-chr12:29152335..29154917,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10437765	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10437782	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10437783	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10743631	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10771460	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10771461	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10771466	0.80[ASN][1000 genomes]
rs10771467	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10843291	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10843292	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10843295	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1865766	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1865767	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2060567	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2060568	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2099530	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2117996	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2164494	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2349571	0.81[AMR][1000 genomes]
rs2349572	0.84[AMR][1000 genomes]
rs4558201	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4583013	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4930843	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4931127	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4931135	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6487736	0.84[AMR][1000 genomes]
rs6487738	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6487741	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6487742	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6487745	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6487746	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6487749	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7136128	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7138730	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7295074	0.82[AMR][1000 genomes]
rs7297486	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7301343	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7302286	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7302810	0.80[AMR][1000 genomes]
rs7303155	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7303768	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7308244	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7311435	0.82[AMR][1000 genomes]
rs7953668	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7962367	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7963989	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7964060	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7967094	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7969043	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7978848	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7978997	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9651801	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9651839	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532233	chr12:29009388-29496179	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv995123	chr12:29095272-29571558	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2758301	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759888	chr12:29110782-29289849	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:29152600-29157000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:29153200-29157000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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