Variant report

Variant	rs10437837
Chromosome Location	chr12:121211693-121211694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121198595..121200409-chr12:121209397..121212163,2	MCF-7	breast:
2	chr12:121208540..121211022-chr12:121211135..121213895,3	K562	blood:
3	chr12:121211334..121215369-chr12:121217344..121221098,3	K562	blood:
4	chr12:121210691..121212247-chr12:121214029..121215560,2	K562	blood:
5	chr12:121203090..121205836-chr12:121209356..121211928,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255946	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10431373	0.85[EUR][1000 genomes]
rs10774570	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs10849783	0.96[ASN][1000 genomes]
rs10849785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10849789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10849792	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10849794	0.93[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10849795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10849796	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10849798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10849799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10849808	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs10849809	0.85[EUR][1000 genomes]
rs10849814	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11065262	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[ASN][1000 genomes]
rs11065266	0.93[ASN][1000 genomes]
rs11065271	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11065276	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12302189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12423697	0.80[ASN][1000 genomes]
rs2301456	1.00[YRI][hapmap]
rs2948150	1.00[CEU][hapmap]
rs3213569	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs56137011	0.80[ASN][1000 genomes]
rs73229135	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1037070	chr12:121069938-121459047	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv560438	chr12:121194565-121352206	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121196800-121212800	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr12:121197400-121212600	Strong transcription	Thymus	Thymus
3	chr12:121197400-121220000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr12:121197800-121212400	Strong transcription	Liver	Liver
5	chr12:121197800-121220400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr12:121198000-121212000	Strong transcription	Adipose Nuclei	Adipose
7	chr12:121198400-121212200	Strong transcription	Primary B cells from cord blood	blood
8	chr12:121198400-121220800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr12:121199800-121211800	Weak transcription	Right Atrium	heart
10	chr12:121200200-121213000	Strong transcription	Fetal Stomach	stomach
11	chr12:121200600-121222600	Strong transcription	Fetal Muscle Trunk	muscle
12	chr12:121201000-121211800	Weak transcription	Fetal Heart	heart
13	chr12:121201000-121212000	Strong transcription	Fetal Muscle Leg	muscle
14	chr12:121201000-121212600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr12:121201200-121217600	Strong transcription	Primary T cells from cord blood	blood
16	chr12:121204400-121220200	Weak transcription	NHDF-Ad	bronchial
17	chr12:121204800-121211800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr12:121204800-121212000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr12:121204800-121213800	Strong transcription	Fetal Intestine Large	intestine
20	chr12:121205200-121221000	Weak transcription	Stomach Mucosa	stomach
21	chr12:121205600-121212600	Strong transcription	Placenta	Placenta
22	chr12:121205600-121213800	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr12:121206000-121219400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr12:121206200-121238600	Weak transcription	Small Intestine	intestine
25	chr12:121206400-121211800	Weak transcription	HUVEC	blood vessel
26	chr12:121206400-121213400	Strong transcription	Fetal Intestine Small	intestine
27	chr12:121206600-121219800	Weak transcription	Fetal Brain Male	brain
28	chr12:121206600-121220400	Weak transcription	NH-A	brain
29	chr12:121206600-121220600	Weak transcription	NHLF	lung
30	chr12:121206800-121218600	Weak transcription	A549	lung
31	chr12:121206800-121218800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr12:121206800-121219400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr12:121206800-121219400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr12:121206800-121220000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr12:121206800-121220600	Weak transcription	Hela-S3	cervix
36	chr12:121207000-121211800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr12:121207000-121212200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr12:121207000-121213600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr12:121207000-121214000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr12:121207000-121218600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr12:121207000-121220000	Weak transcription	K562	blood
42	chr12:121207000-121220200	Weak transcription	Rectal Smooth Muscle	rectum
43	chr12:121207000-121223800	Weak transcription	Pancreas	Pancrea
44	chr12:121207200-121211800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr12:121207200-121212000	Weak transcription	Brain Angular Gyrus	brain
46	chr12:121207200-121213800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr12:121207200-121214200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr12:121207200-121216800	Weak transcription	HSMM	muscle
49	chr12:121207200-121218200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr12:121207200-121218200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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