Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1123301	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12461934	0.88[ASN][1000 genomes]
rs12608613	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1368468	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1433106	0.90[ASN][1000 genomes]
rs4447549	0.90[ASN][1000 genomes]
rs4802038	0.90[ASN][1000 genomes]
rs4803260	0.90[ASN][1000 genomes]
rs6508867	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6508868	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7245901	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7246072	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7248933	0.90[ASN][1000 genomes]
rs7250238	0.90[ASN][1000 genomes]
rs8106020	0.88[ASN][1000 genomes]
rs8107828	0.81[ASN][1000 genomes]
rs8108097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8110685	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8113617	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8182614	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911690	chr19:39903088-40046863	Weak transcription Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv911692	chr19:39979966-40046863	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv1060251	chr19:39982988-40099773	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv579509	chr19:40004640-40133438	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40031200-40049600	Weak transcription	Right Atrium	heart
2	chr19:40038600-40048000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr19:40041200-40048200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr19:40042200-40044200	Enhancers	Primary B cells from cord blood	blood
5	chr19:40042200-40044200	Enhancers	Primary B cells from peripheral blood	blood
6	chr19:40042200-40044200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr19:40042200-40047200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr19:40042400-40044200	Enhancers	Spleen	Spleen
9	chr19:40042800-40044400	Enhancers	GM12878-XiMat	blood
10	chr19:40043000-40045600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr19:40043000-40048200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr19:40043200-40048000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr19:40043600-40044200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr19:40043600-40048200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr19:40043800-40044200	Enhancers	Placenta	Placenta
16	chr19:40044000-40048200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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