Variant report

Variant	rs10439964
Chromosome Location	chr3:157002449-157002450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156997473..157000192-chr3:157001265..157003413,2	K562	blood:
2	chr3:157001018..157003742-chr3:157209899..157211507,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2305621	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829766	chr3:156811536-157020551	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv877687	chr3:156924793-157044184	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156967200-157007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:156988000-157005800	Weak transcription	Pancreas	Pancrea
3	chr3:156997000-157004400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:156997600-157003600	Weak transcription	K562	blood
5	chr3:156998800-157006000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr3:156999600-157003800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:157000600-157003000	Weak transcription	Fetal Stomach	stomach
8	chr3:157000600-157004000	Enhancers	NHDF-Ad	bronchial
9	chr3:157000600-157015400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:157000800-157004000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:157001200-157003000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:157001400-157003200	Enhancers	HUVEC	blood vessel
13	chr3:157001600-157004000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:157001600-157008200	Weak transcription	NH-A	brain
15	chr3:157001800-157003000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:157001800-157003400	Enhancers	Osteobl	bone
17	chr3:157001800-157004200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:157001800-157004400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr3:157002000-157003200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:157002000-157003600	Weak transcription	NHLF	lung

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