Variant report

Variant	rs10441053
Chromosome Location	chr7:21696327-21696328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10238210	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10246389	0.90[YRI][hapmap]
rs10267599	0.88[YRI][hapmap]
rs10268014	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276934	1.00[CEU][hapmap]
rs10480006	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10480009	1.00[CEU][hapmap]
rs10480010	1.00[CEU][hapmap]
rs17144835	1.00[ASN][1000 genomes]
rs17144904	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17144920	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17691087	1.00[CEU][hapmap]
rs17747311	1.00[ASN][1000 genomes]
rs17747439	1.00[ASN][1000 genomes]
rs17747892	1.00[CEU][hapmap]
rs2919225	1.00[JPT][hapmap]
rs2965390	1.00[JPT][hapmap]
rs2965396	1.00[JPT][hapmap]
rs62445269	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62445270	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973998	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027302	chr7:21391598-21727016	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv538800	chr7:21391598-21727016	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1023655	chr7:21486485-21727016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv538801	chr7:21486485-21727016	ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21695200-21696600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:21695400-21697000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr7:21695600-21696400	Enhancers	Brain Hippocampus Middle	brain
4	chr7:21696000-21696600	Enhancers	Brain Substantia Nigra	brain

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