Variant report

Variant	rs10443966
Chromosome Location	chr10:26637408-26637409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11015053	0.91[ASN][1000 genomes]
rs11015054	0.91[ASN][1000 genomes]
rs11015055	0.91[ASN][1000 genomes]
rs11015064	0.80[ASN][1000 genomes]
rs11015070	0.83[ASN][1000 genomes]
rs11015071	0.83[ASN][1000 genomes]
rs11015073	0.83[ASN][1000 genomes]
rs12146361	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12354630	0.91[ASN][1000 genomes]
rs17668215	0.91[ASN][1000 genomes]
rs17668263	0.91[ASN][1000 genomes]
rs17746346	0.91[ASN][1000 genomes]
rs2152301	0.91[ASN][1000 genomes]
rs2184566	0.91[ASN][1000 genomes]
rs56044970	0.88[ASN][1000 genomes]
rs56107904	0.91[ASN][1000 genomes]
rs57146149	0.91[ASN][1000 genomes]
rs58168298	0.91[ASN][1000 genomes]
rs72801294	0.91[ASN][1000 genomes]
rs72801296	0.91[ASN][1000 genomes]
rs72801298	0.91[ASN][1000 genomes]
rs72803209	0.83[ASN][1000 genomes]
rs72803212	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10443966	LOC387646	cis	cerebellar cortex	BrainEAC

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26636800-26638200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:26637200-26638200	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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