Variant report

Variant	rs10445564
Chromosome Location	chr19:39094893-39094894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12977469	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13345885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1862371	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1978443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2232992	0.87[CEU][hapmap]
rs2287732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2287733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3786834	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4592774	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60803495	1.00[ASN][1000 genomes]
rs62120354	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62120358	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7251456	0.81[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs750438	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs888994	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063471	chr19:38734744-39148392	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
2	nsv470140	chr19:38840139-39119494	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv911663	chr19:38899548-39101879	Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv911665	chr19:38924814-39101879	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv833826	chr19:38945106-39184547	Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv833827	chr19:38993054-39184547	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
7	nsv833828	chr19:39084759-39257979	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv1057899	chr19:39088319-39475493	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
9	esv3371676	chr19:39091312-39096310	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv3372464	chr19:39092312-39095110	Weak transcription Strong transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39070600-39100000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr19:39074800-39101600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr19:39077000-39101600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr19:39077200-39103200	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr19:39086400-39096600	Weak transcription	Fetal Thymus	thymus
6	chr19:39086400-39098400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr19:39086800-39096600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr19:39087200-39107800	Weak transcription	Colonic Mucosa	Colon
9	chr19:39087400-39107400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr19:39087400-39108200	Weak transcription	Gastric	stomach
11	chr19:39087400-39108800	Weak transcription	Right Atrium	heart
12	chr19:39088200-39096200	Weak transcription	Spleen	Spleen
13	chr19:39088400-39096600	Weak transcription	Dnd41	blood
14	chr19:39088400-39098400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr19:39088600-39096200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr19:39088600-39100200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr19:39091200-39095600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr19:39091400-39095600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr19:39092200-39095800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr19:39092400-39095400	Weak transcription	Thymus	Thymus
21	chr19:39092400-39097000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr19:39092600-39095600	Weak transcription	Primary B cells from cord blood	blood
23	chr19:39092600-39109000	Weak transcription	Small Intestine	intestine
24	chr19:39094000-39104600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr19:39094200-39095200	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr19:39094200-39097800	Strong transcription	GM12878-XiMat	blood
27	chr19:39094200-39104200	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr19:39094400-39095000	Enhancers	K562	blood
29	chr19:39094400-39104200	Strong transcription	Primary B cells from peripheral blood	blood
30	chr19:39094400-39105000	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr19:39094600-39104000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr19:39094600-39104400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr19:39094600-39106200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr19:39094800-39103400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr19:39094800-39104000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr19:39094800-39106400	Strong transcription	Primary T cells from cord blood	blood

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