Variant report

Variant	rs10447215
Chromosome Location	chr5:96056373-96056374
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:96055461..96059696-chr5:96062341..96066733,4	K562	blood:
2	chr5:96055812..96056678-chr5:96064645..96065174,2	MCF-7	breast:
3	chr5:95997594..96000233-chr5:96055537..96057890,2	MCF-7	breast:
4	chr5:96050817..96052390-chr5:96054162..96057341,3	K562	blood:
5	chr5:96055852..96056768-chr5:96066195..96066936,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153113	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10515244	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10515246	0.87[EUR][1000 genomes]
rs11738135	0.86[EUR][1000 genomes]
rs11739280	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11744642	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11745122	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11750399	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11750400	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11750510	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12186366	0.87[EUR][1000 genomes]
rs12188168	0.85[EUR][1000 genomes]
rs1559085	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17082200	0.86[EUR][1000 genomes]
rs17086588	0.85[EUR][1000 genomes]
rs17400685	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17400741	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17401901	0.87[EUR][1000 genomes]
rs17402639	0.88[EUR][1000 genomes]
rs17478897	0.92[EUR][1000 genomes]
rs17479052	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34942552	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55695458	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56116814	0.85[EUR][1000 genomes]
rs56122780	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56257788	0.86[EUR][1000 genomes]
rs6864233	0.84[EUR][1000 genomes]
rs72772090	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72772091	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72772092	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72772095	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72773906	0.87[EUR][1000 genomes]
rs72773912	0.88[EUR][1000 genomes]
rs72773919	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024964	chr5:95742124-96065492	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv537811	chr5:95742124-96065492	Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1015173	chr5:95987366-96153392	Genic enhancers Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	nsv830411	chr5:96045168-96187817	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96039200-96059800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:96039600-96063600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:96042800-96076200	Weak transcription	GM12878-XiMat	blood
4	chr5:96045800-96056800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr5:96049800-96058400	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr5:96050800-96057200	Weak transcription	Ovary	ovary
7	chr5:96051000-96056800	Weak transcription	NH-A	brain
8	chr5:96051000-96056800	Weak transcription	NHDF-Ad	bronchial
9	chr5:96051000-96057000	Weak transcription	HSMM	muscle
10	chr5:96051000-96065600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr5:96051000-96067000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr5:96051000-96073600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:96051200-96057000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr5:96051200-96076800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr5:96051400-96056400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:96051400-96056800	Weak transcription	Osteobl	bone
17	chr5:96051400-96059200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr5:96051600-96057000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr5:96051600-96057000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:96051600-96057000	Weak transcription	Aorta	Aorta
21	chr5:96051600-96057000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:96051600-96057400	Weak transcription	Fetal Kidney	kidney
23	chr5:96051600-96057800	Enhancers	HMEC	breast
24	chr5:96051600-96065200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr5:96051600-96065400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr5:96051800-96056400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr5:96051800-96056400	Weak transcription	HSMMtube	muscle
28	chr5:96051800-96056800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr5:96051800-96060000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr5:96051800-96060800	Weak transcription	HUVEC	blood vessel
31	chr5:96052200-96057600	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr5:96052200-96058200	Weak transcription	Primary B cells from peripheral blood	blood
33	chr5:96052400-96065400	Weak transcription	HepG2	liver
34	chr5:96052400-96065600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr5:96052800-96057800	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr5:96053000-96057000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr5:96053000-96062400	Weak transcription	Primary T cells from cord blood	blood
38	chr5:96053000-96069600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr5:96053400-96060800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr5:96053400-96065600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr5:96053400-96065600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr5:96053400-96066200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr5:96053600-96057000	Weak transcription	Small Intestine	intestine
44	chr5:96054000-96058200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr5:96054200-96057400	Enhancers	Right Atrium	heart
46	chr5:96054400-96057400	Enhancers	Left Ventricle	heart
47	chr5:96054600-96056800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr5:96054600-96057000	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr5:96054800-96056800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr5:96054800-96056800	Weak transcription	Rectal Smooth Muscle	rectum

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