Variant report

Variant	rs10447247
Chromosome Location	chr5:106699782-106699783
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10053294	0.90[ASN][1000 genomes]
rs10447245	0.92[EUR][1000 genomes]
rs10447246	0.92[EUR][1000 genomes]
rs10447298	0.92[EUR][1000 genomes]
rs10447300	0.92[EUR][1000 genomes]
rs28818231	0.90[ASN][1000 genomes]
rs7710322	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2760982	chr5:106680849-106702473	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106694800-106702400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr5:106696000-106700400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr5:106696200-106700600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr5:106696400-106700600	Weak transcription	Primary B cells from cord blood	blood
5	chr5:106696400-106700600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:106696600-106700800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:106697000-106701200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr5:106697800-106700600	Weak transcription	A549	lung
9	chr5:106698000-106706000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:106698200-106701000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr5:106698400-106706000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:106699000-106702000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr5:106699600-106700800	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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