Variant report

Variant	rs10452195
Chromosome Location	chr4:120776279-120776280
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10008120	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1027691	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1027692	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13115558	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13141731	0.84[EUR][1000 genomes]
rs1393967	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1503538	0.85[EUR][1000 genomes]
rs17298990	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2174170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28690386	0.91[EUR][1000 genomes]
rs4280713	0.95[EUR][1000 genomes]
rs4834818	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4834819	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9991943	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120758600-120794000	Weak transcription	Aorta	Aorta
2	chr4:120775400-120776400	Enhancers	Osteobl	bone
3	chr4:120776000-120776400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:120776200-120776400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:120776200-120778000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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