Variant report

Variant	rs10452544
Chromosome Location	chr5:118622488-118622489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:118622239..118624892-chr5:118626281..118628350,2	MCF-7	breast:
2	chr5:118604065..118607023-chr5:118622337..118626495,5	MCF-7	breast:
3	chr5:118622285..118624506-chr5:118651501..118653957,2	MCF-7	breast:
4	chr5:118609964..118611606-chr5:118621803..118623586,2	MCF-7	breast:
5	chr5:118607071..118610754-chr5:118620607..118623123,4	K562	blood:
6	chr5:118617115..118620555-chr5:118621915..118624851,4	MCF-7	breast:
7	chr5:118602857..118608494-chr5:118621291..118626100,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145779	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10452545	1.00[AMR][1000 genomes]
rs12109360	0.88[AFR][1000 genomes]
rs17144974	1.00[AMR][1000 genomes]
rs57574427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59344448	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59473275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59758980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73235231	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73235244	1.00[AMR][1000 genomes]
rs73248908	1.00[AMR][1000 genomes]
rs73248911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73248974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73248976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73248978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73248981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73248988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73248995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73250803	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73250806	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73250810	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73250902	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73252305	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73252308	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73252311	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73252320	1.00[AMR][1000 genomes]
rs73252322	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757136	chr5:118555863-118667748	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv2759374	chr5:118555863-118667748	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1024648	chr5:118608175-118678268	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv869828	chr5:118610548-118691190	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118610600-118622600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr5:118610800-118626000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr5:118611200-118623200	Weak transcription	Fetal Intestine Small	intestine
4	chr5:118611200-118625200	Weak transcription	Right Atrium	heart
5	chr5:118611400-118622600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:118611800-118623200	Weak transcription	HUVEC	blood vessel
7	chr5:118612000-118625200	Weak transcription	Fetal Muscle Leg	muscle
8	chr5:118613200-118623400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr5:118613800-118626000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:118614000-118623400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:118614400-118623200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr5:118615000-118626200	Weak transcription	Spleen	Spleen
13	chr5:118616800-118624600	Enhancers	Fetal Heart	heart
14	chr5:118617600-118622600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr5:118618000-118622600	Weak transcription	Fetal Lung	lung
16	chr5:118618400-118627800	Weak transcription	Right Ventricle	heart
17	chr5:118618600-118622600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:118618800-118622600	Weak transcription	HMEC	breast
19	chr5:118618800-118623800	Weak transcription	Fetal Kidney	kidney
20	chr5:118619200-118623200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr5:118619400-118622600	Enhancers	Primary B cells from cord blood	blood
22	chr5:118619400-118622600	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr5:118619400-118622600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr5:118619400-118622600	Weak transcription	Fetal Stomach	stomach
25	chr5:118619400-118628600	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr5:118619600-118622600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr5:118619800-118629600	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr5:118620000-118622600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:118620000-118622800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr5:118620000-118625200	Weak transcription	Gastric	stomach
31	chr5:118620000-118629400	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr5:118620400-118623200	Enhancers	Primary hematopoietic stem cells	blood
33	chr5:118620600-118623600	Weak transcription	Aorta	Aorta
34	chr5:118620800-118623200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr5:118620800-118623600	Enhancers	Adipose Nuclei	Adipose
36	chr5:118620800-118624800	Enhancers	Osteobl	bone
37	chr5:118620800-118625200	Enhancers	NH-A	brain
38	chr5:118621000-118623200	Enhancers	NHEK	skin
39	chr5:118621000-118623600	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr5:118621000-118625800	Enhancers	Sigmoid Colon	Sigmoid Colon
41	chr5:118621200-118622600	Enhancers	Primary T cells fromperipheralblood	blood
42	chr5:118621200-118622600	Enhancers	Fetal Thymus	thymus
43	chr5:118621200-118622800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr5:118621200-118623000	Weak transcription	HSMM	muscle
45	chr5:118621200-118624600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr5:118621400-118622600	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr5:118621400-118623400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr5:118621400-118623400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr5:118621400-118623400	Enhancers	K562	blood
50	chr5:118621400-118623600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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