Variant report

Variant	rs10452622
Chromosome Location	chr6:132159202-132159203
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132158163..132159947-chr6:132166352..132169019,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs41286150	1.00[EUR][1000 genomes]
rs55893997	1.00[EUR][1000 genomes]
rs55910745	1.00[EUR][1000 genomes]
rs56235303	1.00[EUR][1000 genomes]
rs56814151	1.00[EUR][1000 genomes]
rs59610382	1.00[EUR][1000 genomes]
rs60455745	1.00[EUR][1000 genomes]
rs61209790	1.00[EUR][1000 genomes]
rs62424475	1.00[EUR][1000 genomes]
rs62424476	0.93[EUR][1000 genomes]
rs62424477	1.00[EUR][1000 genomes]
rs62424479	1.00[EUR][1000 genomes]
rs62424480	1.00[EUR][1000 genomes]
rs62424481	1.00[EUR][1000 genomes]
rs62424482	1.00[EUR][1000 genomes]
rs62424483	1.00[EUR][1000 genomes]
rs62424484	1.00[EUR][1000 genomes]
rs62424485	1.00[EUR][1000 genomes]
rs62424486	1.00[EUR][1000 genomes]
rs62424489	1.00[EUR][1000 genomes]
rs62424493	1.00[EUR][1000 genomes]
rs62424495	1.00[EUR][1000 genomes]
rs62424513	1.00[EUR][1000 genomes]
rs62424514	1.00[EUR][1000 genomes]
rs66564329	1.00[EUR][1000 genomes]
rs67025760	1.00[EUR][1000 genomes]
rs67619761	0.93[EUR][1000 genomes]
rs72983672	0.93[EUR][1000 genomes]
rs7741198	0.93[EUR][1000 genomes]
rs7768555	0.93[EUR][1000 genomes]
rs9483345	0.93[EUR][1000 genomes]
rs9493110	1.00[EUR][1000 genomes]
rs9493114	1.00[EUR][1000 genomes]
rs997509	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv886670	chr6:132071193-132193395	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv886671	chr6:132071193-132203432	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132132800-132162400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:132132800-132162800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:132136800-132160200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:132138600-132163000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:132141000-132176000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:132141600-132172000	Weak transcription	HSMM	muscle
7	chr6:132145800-132171800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:132147600-132199200	Weak transcription	Fetal Stomach	stomach
9	chr6:132149200-132161800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:132149600-132162000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:132149800-132172200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:132151600-132164800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:132151600-132182400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:132153400-132159400	Weak transcription	NHDF-Ad	bronchial
15	chr6:132154200-132171800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:132157800-132159600	Enhancers	NH-A	brain
17	chr6:132158200-132162000	Weak transcription	Fetal Kidney	kidney
18	chr6:132158200-132162800	Weak transcription	Pancreas	Pancrea
19	chr6:132158200-132164600	Weak transcription	NHLF	lung
20	chr6:132158200-132171200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:132158400-132165000	Enhancers	HepG2	liver
22	chr6:132159000-132159400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr6:132159000-132159600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr6:132159000-132160200	Weak transcription	Liver	Liver
25	chr6:132159200-132159600	Enhancers	Osteobl	bone

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