Variant report

Variant	rs1045394
Chromosome Location	chr16:79640048-79640049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:79640047..79642823-chr16:79655251..79657504,2	MCF-7	breast:
2	chr16:79638454..79641021-chr16:79697878..79699987,2	K562	blood:
3	chr16:79635014..79637363-chr16:79638554..79641857,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WWOX-4	chr16:79639434-79640467	NONHSAT143848

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28465222	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34511487	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8055339	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8059614	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs889473	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9941016	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv457554	chr16:79608408-79645989	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv573289	chr16:79608408-79645989	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv827768	chr16:79615278-79640094	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79635600-79652400	Weak transcription	Spleen	Spleen
2	chr16:79635800-79640200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr16:79636200-79640200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr16:79636200-79653800	Weak transcription	Right Atrium	heart
5	chr16:79636600-79640800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr16:79636600-79641400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr16:79636600-79642600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr16:79636800-79640200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr16:79636800-79641200	Weak transcription	Colon Smooth Muscle	Colon
10	chr16:79636800-79641200	Weak transcription	HSMM	muscle
11	chr16:79636800-79641400	Weak transcription	HSMMtube	muscle
12	chr16:79636800-79646400	Weak transcription	NHLF	lung
13	chr16:79637000-79641200	Weak transcription	Fetal Muscle Leg	muscle
14	chr16:79637000-79641200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr16:79637000-79641400	Weak transcription	Brain Hippocampus Middle	brain
16	chr16:79637000-79641400	Weak transcription	Psoas Muscle	Psoas
17	chr16:79637200-79641200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr16:79637200-79641200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr16:79637200-79641400	Weak transcription	Fetal Stomach	stomach
20	chr16:79637200-79641600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr16:79638400-79640800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr16:79638400-79641400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr16:79638600-79641200	Weak transcription	Fetal Intestine Large	intestine
24	chr16:79638600-79641600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr16:79638800-79640400	Enhancers	Fetal Lung	lung
26	chr16:79638800-79643800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr16:79639400-79640200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr16:79639400-79640400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr16:79639400-79640400	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr16:79639400-79643600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr16:79639400-79645200	Enhancers	HMEC	breast
32	chr16:79639600-79640400	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr16:79639600-79640400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr16:79639600-79640400	Enhancers	Adipose Nuclei	Adipose
35	chr16:79639600-79640400	Enhancers	GM12878-XiMat	blood
36	chr16:79639600-79640400	Enhancers	NH-A	brain
37	chr16:79639600-79640400	Flanking Active TSS	NHEK	skin
38	chr16:79639600-79640400	Enhancers	Osteobl	bone
39	chr16:79639600-79642200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr16:79639600-79642200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr16:79639600-79642200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr16:79639600-79644000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr16:79639800-79640200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr16:79639800-79640200	Enhancers	Primary T cells from cord blood	blood
45	chr16:79639800-79640400	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr16:79639800-79640400	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr16:79639800-79640400	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr16:79639800-79640400	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr16:79639800-79640400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr16:79639800-79640400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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