Variant report

Variant	rs10454559
Chromosome Location	chr13:30309999-30310000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11619306	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12584812	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3783244	0.88[MKK][hapmap]
rs720083	0.88[MKK][hapmap]
rs9579479	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899961	chr13:30226924-30407273	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30305800-30310600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:30307200-30310200	Enhancers	GM12878-XiMat	blood
3	chr13:30307800-30312800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr13:30308600-30310400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr13:30309800-30310000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr13:30309800-30310200	Bivalent Enhancer	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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