Variant report

Variant	rs10454741
Chromosome Location	chr2:172165129-172165130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11674632	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11679835	0.82[EUR][1000 genomes]
rs11687454	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11691073	0.86[AMR][1000 genomes]
rs12105780	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12995219	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13000846	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13002817	0.86[AMR][1000 genomes]
rs13002867	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13023287	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13023973	0.82[AMR][1000 genomes]
rs13031794	0.86[AMR][1000 genomes]
rs13398989	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2111459	0.86[AMR][1000 genomes]
rs2356707	0.84[AMR][1000 genomes]
rs34096402	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6722670	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7592018	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172144200-172171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:172150400-172166400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:172151600-172166400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:172151600-172168400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:172154600-172168600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:172161800-172167200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr2:172162800-172165200	Weak transcription	Primary B cells from cord blood	blood
8	chr2:172163800-172165800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr2:172163800-172181400	Weak transcription	Gastric	stomach
10	chr2:172164600-172165200	Weak transcription	Liver	Liver
11	chr2:172164800-172165400	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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