Variant report

Variant	rs10455078
Chromosome Location	chr5:178258272-178258273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178250159..178253046-chr5:178256116..178259012,3	MCF-7	breast:
2	chr5:178228775..178231759-chr5:178257850..178260513,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10794696	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11249573	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11249575	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11249577	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11249578	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11249597	0.83[ASN][1000 genomes]
rs11737921	0.86[EUR][1000 genomes]
rs11741278	0.83[ASN][1000 genomes]
rs11745899	0.83[ASN][1000 genomes]
rs11747701	0.83[ASN][1000 genomes]
rs12153059	0.83[ASN][1000 genomes]
rs13158304	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13158576	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13177350	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13180089	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13185217	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34557468	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34727982	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35041056	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35506175	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4073865	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700791	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700792	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700795	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4700814	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4701097	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4701147	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66583878	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6876756	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7711127	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9686220	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031206	chr5:178149292-178283614	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv537973	chr5:178149292-178283614	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv968861	chr5:178251700-178275142	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv600453	chr5:178252366-178259787	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv600454	chr5:178257859-178259891	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178254000-178259400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:178254200-178259400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:178256400-178258600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:178257200-178259200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr5:178257200-178259400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:178257600-178259400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:178257800-178258800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr5:178258200-178258400	Enhancers	K562	blood
9	chr5:178258200-178259800	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr5:178258200-178260000	Active TSS	ES-I3 Cell Line	embryonic stem cell

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