Variant report

Variant	rs10455684
Chromosome Location	chr6:70059834-70059835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12190438	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12191069	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12195787	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12211243	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12214328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9360384	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv603634	chr6:70007450-70060225	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv463149	chr6:70007450-70097588	Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv603635	chr6:70007450-70097588	Weak transcription Enhancers Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70049600-70080600	Weak transcription	Fetal Brain Male	brain
2	chr6:70054200-70066000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:70054400-70070800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:70054600-70098600	Weak transcription	Brain Anterior Caudate	brain
5	chr6:70054600-70100600	Weak transcription	Brain Angular Gyrus	brain
6	chr6:70054800-70060000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:70054800-70060000	Weak transcription	Brain Substantia Nigra	brain
8	chr6:70054800-70080600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:70058600-70060200	Enhancers	Brain Hippocampus Middle	brain
10	chr6:70059200-70083200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:70059600-70060200	Enhancers	Fetal Muscle Leg	muscle
12	chr6:70059800-70060000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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