Variant report

Variant	rs10455876
Chromosome Location	chr6:161645205-161645206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:161625591..161627830-chr6:161643657..161645730,2	K562	blood:
2	chr6:161644500..161646792-chr6:161664234..161665888,2	K562	blood:
3	chr6:161640999..161643689-chr6:161644349..161647234,3	K562	blood:
4	chr6:161636838..161639759-chr6:161642282..161646274,4	K562	blood:
5	chr6:161644845..161647790-chr6:161673839..161676108,3	K562	blood:
6	chr6:161643766..161646646-chr6:161649378..161651893,2	K562	blood:
7	chr6:161643850..161652009-chr6:161690298..161699013,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000026652	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10455877	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202278	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207275	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215513	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778230	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6455713	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746735	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1029727	chr6:161607680-161814295	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1030623	chr6:161611170-161796985	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv538494	chr6:161611170-161796985	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv886818	chr6:161629323-161723705	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161599800-161647600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:161626400-161646600	Weak transcription	Left Ventricle	heart
3	chr6:161634200-161649800	Weak transcription	Pancreas	Pancrea
4	chr6:161636000-161646800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:161636200-161647800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr6:161636400-161648200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:161636400-161649200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:161636600-161647200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:161636600-161648800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:161636600-161655000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:161636600-161656000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:161636800-161647200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:161637000-161647000	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:161637000-161649000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:161637000-161650000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr6:161637400-161646600	Weak transcription	Fetal Kidney	kidney
17	chr6:161637400-161649200	Weak transcription	Osteobl	bone
18	chr6:161637600-161648600	Weak transcription	NH-A	brain
19	chr6:161637600-161649800	Weak transcription	NHLF	lung
20	chr6:161638200-161646600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:161638200-161693800	Weak transcription	Fetal Intestine Small	intestine
22	chr6:161638400-161650600	Weak transcription	Esophagus	oesophagus
23	chr6:161638600-161646600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:161638600-161646600	Weak transcription	HSMMtube	muscle
25	chr6:161638600-161647200	Weak transcription	Fetal Lung	lung
26	chr6:161638600-161649400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:161638600-161668000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:161638800-161646600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:161639000-161646600	Weak transcription	Ovary	ovary
30	chr6:161639000-161647000	Weak transcription	Right Atrium	heart
31	chr6:161639000-161647600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:161639000-161647800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:161639000-161650000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:161639000-161666200	Weak transcription	Aorta	Aorta
35	chr6:161639200-161646600	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr6:161639200-161646600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:161639200-161646800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr6:161639200-161646800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr6:161639200-161647000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:161639200-161647800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:161639200-161648400	Weak transcription	Primary B cells from cord blood	blood
42	chr6:161639200-161648400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr6:161639200-161664400	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr6:161639400-161646200	Weak transcription	Fetal Brain Female	brain
45	chr6:161639400-161647000	Weak transcription	Brain Anterior Caudate	brain
46	chr6:161639400-161650000	Weak transcription	Brain Germinal Matrix	brain
47	chr6:161639600-161646600	Weak transcription	Placenta	Placenta
48	chr6:161639600-161647200	Weak transcription	Fetal Muscle Leg	muscle
49	chr6:161639800-161650200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr6:161641200-161646000	Weak transcription	Primary T helper cells fromperipheralblood	blood

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