Variant report

Variant	rs10456368
Chromosome Location	chr6:28692896-28692897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28692257..28693945-chr6:28757387..28759135,2	K562	blood:
2	chr6:28690957..28693592-chr6:28715532..28717190,2	K562	blood:
3	chr6:28692707..28694832-chr6:28724756..28727492,3	K562	blood:
4	chr6:28691994..28695396-chr6:28761030..28763739,3	K562	blood:
5	chr6:26030101..26033875-chr6:28691435..28694341,3	K562	blood:
6	chr6:28690825..28693776-chr6:28694018..28695886,2	MCF-7	breast:
7	chr6:28582658..28585156-chr6:28692576..28695191,2	K562	blood:
8	chr6:28447279..28449028-chr6:28691050..28693520,2	K562	blood:
9	chr6:28692512..28694882-chr6:28831386..28833136,2	K562	blood:
10	chr6:28692413..28694711-chr6:28778373..28780345,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000232040	Chromatin interaction
ENSG00000225595	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000137259	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs34518109	1.00[ASN][1000 genomes]
rs7745088	1.00[AMR][1000 genomes]
rs9468418	1.00[AMR][1000 genomes]
rs9501014	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28689800-28693000	Weak transcription	HepG2	liver
2	chr6:28692600-28693600	Active TSS	A549	lung
3	chr6:28692800-28693200	Active TSS	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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