Variant report

Variant	rs10456432
Chromosome Location	chr6:35671651-35671652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr6:35671518-35671829	K562	blood:	n/a	n/a
2	USF1	chr6:35671372-35671693	ECC-1	luminal epithelium:	n/a	chr6:35671507-35671518
3	CBX3	chr6:35671291-35671749	K562	blood:	n/a	n/a
4	NR2F2	chr6:35671223-35671781	K562	blood:	n/a	n/a
5	NFYA	chr6:35671459-35671692	K562	blood:	n/a	n/a
6	YY1	chr6:35671560-35671852	GM12878	blood:	n/a	n/a
7	MAX	chr6:35671467-35671654	H1-hESC	embryonic stem cell:	n/a	n/a
8	NFYB	chr6:35671348-35671796	K562	blood:	n/a	n/a
9	USF1	chr6:35671396-35671651	HepG2	liver:	n/a	chr6:35671507-35671518
10	KAP1	chr6:35671237-35671836	K562	blood:	n/a	n/a
11	USF2	chr6:35671391-35671689	H1-hESC	embryonic stem cell:	n/a	chr6:35671507-35671518
12	CBX3	chr6:35671222-35671876	K562	blood:	n/a	n/a
13	ZNF143	chr6:35671338-35671667	K562	blood:	n/a	n/a
14	YY1	chr6:35671524-35671783	GM12891	blood:	n/a	n/a
15	USF1	chr6:35671234-35671777	K562	blood:	n/a	chr6:35671507-35671518
16	SETDB1	chr6:35671362-35671711	U2OS	brain:	n/a	n/a
17	USF2	chr6:35671413-35671689	Hela-S3	cervix:	n/a	chr6:35671507-35671518
18	USF1	chr6:35671313-35671746	H1-hESC	embryonic stem cell:	n/a	chr6:35671507-35671518
19	USF1	chr6:35671405-35671653	GM12878	blood:	n/a	chr6:35671507-35671518
20	USF1	chr6:35671307-35671762	ECC-1	luminal epithelium:	n/a	chr6:35671507-35671518
21	NFYB	chr6:35671444-35671713	Hela-S3	cervix:	n/a	n/a
22	USF1	chr6:35671211-35671675	K562	blood:	n/a	chr6:35671507-35671518
23	NR2F2	chr6:35671437-35671734	K562	blood:	n/a	n/a
24	USF1	chr6:35671366-35671721	HCT-116	colon:	n/a	chr6:35671507-35671518
25	YY1	chr6:35671581-35671801	GM12892	blood:	n/a	n/a
26	MAX	chr6:35671359-35671706	K562	blood:	n/a	n/a
27	USF1	chr6:35671349-35671651	H1-hESC	embryonic stem cell:	n/a	chr6:35671507-35671518
28	NFYA	chr6:35671502-35671661	GM12878	blood:	n/a	n/a
29	TRIM28	chr6:35671226-35671748	K562	blood:	n/a	n/a
30	HCFC1	chr6:35671352-35671687	K562	blood:	n/a	n/a
31	NFYB	chr6:35671344-35671812	GM12878	blood:	n/a	n/a
32	USF2	chr6:35671369-35671665	K562	blood:	n/a	chr6:35671507-35671518

No.	Distal block	Cell Line	Cell type
1	chr6:35655663..35658239-chr6:35669064..35672601,3	K562	blood:
2	chr6:35670182..35673104-chr6:35694466..35696068,2	K562	blood:
3	chr6:35669147..35672136-chr6:35698137..35700263,2	K562	blood:

Variant related genes	Relation type
ENSG00000223063	TF binding region
ENSG00000096060	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10456431	0.84[EUR][1000 genomes]
rs12190582	0.92[EUR][1000 genomes]
rs12197246	0.86[EUR][1000 genomes]
rs12200498	0.86[CHB][hapmap]
rs17542466	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3798346	0.86[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs55694295	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55987213	0.84[EUR][1000 genomes]
rs6924087	0.82[CEU][hapmap]
rs9470056	0.82[CEU][hapmap]
rs9470059	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv885801	chr6:35537406-35671651	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv885802	chr6:35621781-35787417	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
8	nsv885803	chr6:35621781-35805133	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv885804	chr6:35621781-35809776	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
10	nsv428143	chr6:35637083-35806504	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	nsv1028947	chr6:35670521-35714541	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35667200-35681200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:35670000-35684600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:35671400-35671800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:35671400-35672400	ZNF genes & repeats	Thymus	Thymus
5	chr6:35671600-35671800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:35671600-35671800	ZNF genes & repeats	Pancreas	Pancrea
7	chr6:35671600-35672000	ZNF genes & repeats	Fetal Thymus	thymus
8	chr6:35671600-35674400	Weak transcription	HepG2	liver

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