Variant report

Variant	rs10457349
Chromosome Location	chr6:119455554-119455555
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119453269..119456548-chr6:119464804..119468578,3	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs706981	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs706983	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7751267	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9385067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9387636	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9401129	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10457349	FAM184A	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119450600-119458800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:119450600-119469600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:119451400-119468800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:119451800-119460400	Weak transcription	HSMMtube	muscle
5	chr6:119452200-119458800	Weak transcription	HepG2	liver
6	chr6:119452400-119457800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:119452800-119460200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:119453800-119458000	Weak transcription	Fetal Lung	lung
9	chr6:119453800-119458400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:119454000-119457800	Weak transcription	Brain Germinal Matrix	brain
11	chr6:119454000-119458000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:119454000-119458200	Weak transcription	NHDF-Ad	bronchial
13	chr6:119454000-119458200	Weak transcription	Osteobl	bone
14	chr6:119454000-119458600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:119454200-119457600	Weak transcription	K562	blood
16	chr6:119454200-119457800	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr6:119454200-119457800	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr6:119454200-119458000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:119454200-119458600	Weak transcription	Adipose Nuclei	Adipose
20	chr6:119454400-119458200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:119454800-119458600	Weak transcription	Pancreas	Pancrea
22	chr6:119455000-119457800	Weak transcription	Fetal Muscle Leg	muscle

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