Variant report

Variant	rs10457573
Chromosome Location	chr6:131908149-131908150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131902913..131905166-chr6:131906434..131909416,3	K562	blood:
2	chr6:131907035..131909743-chr6:131911037..131912739,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10080319	1.00[CHB][hapmap];1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv886668	chr6:131814865-131954797	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131883400-131914000	Weak transcription	Pancreas	Pancrea
2	chr6:131887800-131910600	Weak transcription	Small Intestine	intestine
3	chr6:131888200-131908800	Weak transcription	Brain Angular Gyrus	brain
4	chr6:131889600-131923200	Weak transcription	Esophagus	oesophagus
5	chr6:131890600-131909600	Weak transcription	Psoas Muscle	Psoas
6	chr6:131890800-131910600	Weak transcription	Brain Substantia Nigra	brain
7	chr6:131892400-131941400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:131894000-131948000	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr6:131895400-131909600	Weak transcription	Stomach Mucosa	stomach
10	chr6:131895600-131946600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:131895800-131908400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:131896000-131910800	Weak transcription	Colonic Mucosa	Colon
13	chr6:131896400-131915200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:131896400-131946800	Strong transcription	Adipose Nuclei	Adipose
15	chr6:131896600-131946200	Strong transcription	Primary B cells from peripheral blood	blood
16	chr6:131896600-131946800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:131897000-131947800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:131897200-131919600	Weak transcription	Spleen	Spleen
19	chr6:131897200-131947200	Strong transcription	Fetal Thymus	thymus
20	chr6:131897200-131948000	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr6:131897400-131923200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr6:131897600-131912400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:131897800-131931600	Strong transcription	Fetal Muscle Trunk	muscle
24	chr6:131898200-131914600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:131898200-131948600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:131898200-131948600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:131898400-131940000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr6:131898400-131947400	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr6:131898600-131914200	Weak transcription	A549	lung
30	chr6:131898600-131923800	Strong transcription	Primary B cells from cord blood	blood
31	chr6:131898800-131908600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr6:131898800-131911800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:131899000-131946800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr6:131899000-131946800	Strong transcription	Duodenum Mucosa	Duodenum
35	chr6:131899000-131946800	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr6:131899000-131948000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:131899200-131924200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:131899200-131945800	Strong transcription	HepG2	liver
39	chr6:131899200-131946400	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr6:131899400-131935200	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr6:131899400-131946800	Strong transcription	Placenta	Placenta
42	chr6:131899400-131947400	Strong transcription	Dnd41	blood
43	chr6:131899400-131947800	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:131899600-131923800	Strong transcription	Osteobl	bone
45	chr6:131899600-131946800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:131899600-131947800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:131899800-131923800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:131899800-131924200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:131900000-131910600	Strong transcription	Thymus	Thymus
50	chr6:131900000-131923200	Strong transcription	Fetal Intestine Large	intestine

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