Variant report

Variant	rs10458626
Chromosome Location	chr1:155281689-155281690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155264765..155268361-chr1:155281187..155284828,3	K562	blood:
2	chr1:155228693..155233633-chr1:155276892..155283389,6	K562	blood:
3	chr1:155218964..155221889-chr1:155280867..155282547,2	MCF-7	breast:
4	chr1:155232261..155234786-chr1:155281674..155283762,2	K562	blood:

Variant related genes	Relation type
ENSG00000160767	Chromatin interaction
ENSG00000116521	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58624579	0.88[AFR][1000 genomes]
rs60791549	0.88[AFR][1000 genomes]
rs8177966	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757756	chr1:155094978-155314807	Bivalent Enhancer Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
2	esv2758971	chr1:155094978-155314807	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	452 gene(s)	inside rSNPs	diseases
3	nsv872457	chr1:155135335-155310443	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
4	nsv831625	chr1:155145634-155313409	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	407 gene(s)	inside rSNPs	diseases
5	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
6	nsv831636	chr1:155219223-155444864	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155278400-155283600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:155279200-155290400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:155279400-155282000	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:155279400-155282200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:155279400-155282400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:155279400-155283400	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:155279600-155284200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:155279800-155282200	Transcr. at gene 5' and 3'	Fetal Adrenal Gland	Adrenal Gland
9	chr1:155279800-155282400	Weak transcription	Ovary	ovary
10	chr1:155279800-155283200	Weak transcription	Aorta	Aorta
11	chr1:155279800-155290400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr1:155280000-155282000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:155280000-155282000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr1:155280000-155282000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr1:155280000-155282000	Weak transcription	Brain Germinal Matrix	brain
16	chr1:155280000-155282000	Weak transcription	Fetal Lung	lung
17	chr1:155280000-155282000	Weak transcription	Left Ventricle	heart
18	chr1:155280000-155282200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:155280000-155282800	Weak transcription	Fetal Heart	heart
20	chr1:155280000-155283000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr1:155280000-155285200	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr1:155280000-155286800	Weak transcription	Brain Anterior Caudate	brain
23	chr1:155280000-155287200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr1:155280000-155287800	Weak transcription	Brain Angular Gyrus	brain
25	chr1:155280000-155290000	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr1:155280000-155290200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr1:155280000-155290200	Weak transcription	Right Atrium	heart
28	chr1:155280000-155290400	Weak transcription	Psoas Muscle	Psoas
29	chr1:155280200-155281800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr1:155280200-155281800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr1:155280200-155282000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr1:155280200-155282000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr1:155280200-155282000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr1:155280200-155282000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr1:155280200-155282000	Weak transcription	Colonic Mucosa	Colon
36	chr1:155280200-155282000	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr1:155280200-155282000	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr1:155280200-155282200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr1:155280200-155282400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr1:155280200-155282600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr1:155280200-155282800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr1:155280200-155283000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr1:155280200-155283000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr1:155280200-155283600	Strong transcription	A549	lung
45	chr1:155280200-155285000	Strong transcription	Fetal Intestine Small	intestine
46	chr1:155280200-155288200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr1:155280200-155289800	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr1:155280200-155289800	Strong transcription	Fetal Stomach	stomach
49	chr1:155280200-155290000	Weak transcription	Colon Smooth Muscle	Colon
50	chr1:155280200-155290400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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