Variant report

Variant	rs10459607
Chromosome Location	chr15:40028601-40028602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11856448	0.93[JPT][hapmap]
rs12911842	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs16969637	0.94[JPT][hapmap]
rs16969640	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40021800-40038000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:40027000-40029400	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr15:40027600-40028800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:40027600-40029600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:40028200-40029200	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr15:40028400-40029000	Enhancers	Fetal Kidney	kidney
7	chr15:40028400-40029000	Enhancers	Right Atrium	heart
8	chr15:40028400-40029200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:40028400-40029200	Enhancers	Fetal Muscle Leg	muscle
10	chr15:40028400-40029400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:40028400-40029400	Enhancers	Adipose Nuclei	Adipose
12	chr15:40028400-40029600	Enhancers	Placenta	Placenta
13	chr15:40028400-40029600	Enhancers	Fetal Stomach	stomach
14	chr15:40028400-40029600	Enhancers	Left Ventricle	heart
15	chr15:40028600-40029200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:40028600-40029200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:40028600-40029600	Enhancers	Brain Germinal Matrix	brain
18	chr15:40028600-40029600	Enhancers	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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