Variant report

Variant	rs10460312
Chromosome Location	chr2:171753302-171753303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1035827	0.82[JPT][hapmap]
rs10930446	0.86[EUR][1000 genomes]
rs11696064	0.82[JPT][hapmap]
rs11896607	0.95[EUR][1000 genomes]
rs12467996	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12618898	0.80[JPT][hapmap]
rs1541781	0.95[EUR][1000 genomes]
rs16859050	0.82[JPT][hapmap]
rs2356238	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3755124	0.82[JPT][hapmap]
rs3755126	0.82[JPT][hapmap]
rs4233833	0.86[EUR][1000 genomes]
rs4667666	0.86[EUR][1000 genomes]
rs6729098	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs754058	0.82[JPT][hapmap]
rs7558586	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs919190	0.95[EUR][1000 genomes]
rs930036	0.82[JPT][hapmap]
rs964172	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431801	chr2:171721493-171966493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10460312	TLK1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171750600-171753600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:171751000-171761800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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