Variant report

Variant	rs10461673
Chromosome Location	chr5:28404685-28404686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:28404673..28406500-chr5:30183906..30186680,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4131523	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880550	chr5:27863157-28732126	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1026700	chr5:28067287-28978638	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv537707	chr5:28067287-28978638	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1017761	chr5:28270595-28494470	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv537709	chr5:28270595-28494470	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1029219	chr5:28370908-29086506	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv537710	chr5:28370908-29086506	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:28402600-28405400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:28402600-28405600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:28404000-28405200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr5:28404000-28405200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:28404000-28406200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:28404200-28405400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:28404400-28404800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:28404400-28405000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:28404400-28405200	Weak transcription	Brain Substantia Nigra	brain
10	chr5:28404400-28406000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:28404400-28406000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr5:28404400-28406200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:28404400-28406400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr5:28404600-28405400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr5:28404600-28405400	ZNF genes & repeats	Esophagus	oesophagus
16	chr5:28404600-28405600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:28404600-28407600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr5:28404600-28407600	Weak transcription	HMEC	breast
19	chr5:28404600-28407800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:28404600-28407800	Weak transcription	NH-A	brain

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