Variant report

Variant	rs10462511
Chromosome Location	chr5:74384115-74384116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10214239	0.85[AFR][1000 genomes]
rs10462354	0.91[ASW][hapmap];0.85[CEU][hapmap];0.90[LWK][hapmap];0.88[YRI][hapmap]
rs10462512	0.83[AFR][1000 genomes]
rs10942729	0.91[ASW][hapmap];0.85[CEU][hapmap];0.90[LWK][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes]
rs12523187	0.89[AFR][1000 genomes]
rs1345704	0.85[CEU][hapmap];0.88[YRI][hapmap]
rs1363577	0.91[ASW][hapmap];0.85[CEU][hapmap];0.90[LWK][hapmap];0.88[YRI][hapmap]
rs1363578	0.81[JPT][hapmap]
rs1363579	0.88[CEU][hapmap];0.82[YRI][hapmap]
rs1422697	0.85[CEU][hapmap];0.88[YRI][hapmap]
rs1422698	0.91[ASW][hapmap];0.85[CEU][hapmap];0.90[LWK][hapmap];0.88[YRI][hapmap]
rs1422701	0.85[CEU][hapmap];0.88[YRI][hapmap]
rs1477937	0.90[ASW][hapmap];0.84[CEU][hapmap];0.88[YRI][hapmap]
rs2216638	0.91[ASW][hapmap];0.85[CEU][hapmap];0.90[LWK][hapmap];0.88[YRI][hapmap]
rs3935470	0.91[ASW][hapmap]
rs4128618	0.87[AFR][1000 genomes]
rs4235683	0.83[AFR][1000 genomes]
rs4345300	0.89[AFR][1000 genomes]
rs4361493	0.84[CEU][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes]
rs4389672	0.87[AFR][1000 genomes]
rs4447963	0.89[AFR][1000 genomes]
rs4621537	0.87[AFR][1000 genomes]
rs4627970	0.85[CEU][hapmap];0.88[YRI][hapmap]
rs4703657	0.91[ASW][hapmap];0.85[CEU][hapmap];0.90[LWK][hapmap];0.88[YRI][hapmap]
rs4704183	0.81[CEU][hapmap]
rs4704197	0.81[CEU][hapmap]
rs6453111	0.89[AFR][1000 genomes]
rs6859176	0.89[AFR][1000 genomes]
rs6862740	0.85[AFR][1000 genomes]
rs6864324	0.91[ASW][hapmap];0.85[CEU][hapmap];0.88[YRI][hapmap]
rs6864485	0.85[CEU][hapmap];0.88[YRI][hapmap]
rs6866661	0.91[ASW][hapmap];0.81[CEU][hapmap];0.90[LWK][hapmap]
rs6869345	0.85[AFR][1000 genomes]
rs6879894	0.91[ASW][hapmap];0.85[CEU][hapmap];0.90[LWK][hapmap];0.88[YRI][hapmap]
rs6885071	0.84[CEU][hapmap];0.88[YRI][hapmap]
rs6885887	0.81[CEU][hapmap];0.81[JPT][hapmap];0.88[YRI][hapmap]
rs6889429	0.84[CEU][hapmap];0.87[YRI][hapmap]
rs6889760	0.88[CEU][hapmap];0.88[YRI][hapmap]
rs6896474	0.91[ASW][hapmap];0.85[CEU][hapmap];0.90[LWK][hapmap];0.88[YRI][hapmap]
rs6898116	0.91[ASW][hapmap];0.84[CEU][hapmap];0.90[LWK][hapmap];0.88[YRI][hapmap]
rs7701262	0.87[AFR][1000 genomes]
rs7704104	0.85[CEU][hapmap];0.88[YRI][hapmap]
rs7709707	0.87[AFR][1000 genomes]
rs7711762	0.85[CEU][hapmap];0.87[YRI][hapmap]
rs7735057	0.85[CEU][hapmap];0.81[JPT][hapmap];0.88[YRI][hapmap]
rs9293643	0.87[AFR][1000 genomes]
rs9293650	0.91[ASW][hapmap];0.85[CEU][hapmap];0.88[YRI][hapmap]
rs9654426	0.85[CEU][hapmap];0.88[YRI][hapmap]
rs9654428	0.85[CEU][hapmap];0.88[YRI][hapmap]
rs9654429	0.85[CEU][hapmap];0.87[YRI][hapmap]
rs9763362	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10462511	HMGCR	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74377200-74384600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr5:74384000-74384200	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr5:74384000-74385200	Flanking Active TSS	Hela-S3	cervix
4	chr5:74384000-74385400	Enhancers	Thymus	Thymus

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