Variant report

Variant	rs10463669
Chromosome Location	chr5:114700028-114700029
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:114684315..114686804-chr5:114699761..114703151,3	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10447263	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10519405	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10519406	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11241320	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11241323	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12516512	0.89[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12519220	0.89[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12654590	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12657417	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1445697	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1455849	0.85[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.84[ASN][1000 genomes]
rs1455850	0.85[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.87[ASN][1000 genomes]
rs166566	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17137700	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2416401	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2416402	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2416403	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2416404	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2416406	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2591258	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2605178	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2605179	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs269503	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs269504	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs269505	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs269506	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs269510	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2900093	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34919660	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35900499	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4705524	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4705733	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56177976	0.81[AMR][1000 genomes]
rs7703838	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7704303	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7715232	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7721559	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7733943	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv2757132	chr5:114697260-114737583	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2759370	chr5:114697260-114737583	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114690800-114701400	Weak transcription	Hela-S3	cervix
2	chr5:114696400-114701400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:114696400-114701400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:114696400-114701400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:114696400-114701400	Weak transcription	NH-A	brain
6	chr5:114696400-114701400	Weak transcription	NHLF	lung
7	chr5:114696400-114701600	Weak transcription	Osteobl	bone
8	chr5:114696400-114701800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:114696600-114701400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:114696600-114701400	Weak transcription	HSMMtube	muscle
11	chr5:114696600-114701600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:114696600-114701600	Weak transcription	A549	lung
13	chr5:114696600-114701800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr5:114696800-114702000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr5:114696800-114704200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:114699200-114700400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr5:114699400-114700200	Enhancers	Pancreas	Pancrea
18	chr5:114699600-114700200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr5:114699600-114702600	Enhancers	Fetal Muscle Leg	muscle
20	chr5:114699800-114701400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:114699800-114701400	Weak transcription	Right Ventricle	heart
22	chr5:114699800-114706600	Weak transcription	Gastric	stomach
23	chr5:114700000-114700600	Enhancers	NHDF-Ad	bronchial
24	chr5:114700000-114701400	Weak transcription	Psoas Muscle	Psoas
25	chr5:114700000-114703000	Enhancers	HUVEC	blood vessel
26	chr5:114700000-114704200	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links