Variant report

Variant	rs10463711
Chromosome Location	chr5:118775474-118775475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28943585	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28943586	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs55700001	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55901673	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6898518	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030717	chr5:118709310-118836951	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427732	chr5:118730999-119034741	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv4974	chr5:118750259-118795376	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1024455	chr5:118770429-119487982	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118773600-118775600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:118774000-118775600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:118774000-118775600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:118774600-118775600	Enhancers	Liver	Liver
5	chr5:118774800-118775600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:118774800-118775600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
7	chr5:118774800-118775600	Enhancers	Gastric	stomach
8	chr5:118774800-118775600	Enhancers	Pancreas	Pancrea
9	chr5:118774800-118775600	Active TSS	HepG2	liver
10	chr5:118775200-118775600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr5:118775200-118775600	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr5:118775200-118775600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
13	chr5:118775200-118775600	Enhancers	K562	blood
14	chr5:118775400-118775600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:118775400-118775600	Enhancers	Primary B cells from peripheral blood	blood
16	chr5:118775400-118775600	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
17	chr5:118775400-118775600	Flanking Active TSS	Stomach Mucosa	stomach
18	chr5:118775400-118775600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr5:118775400-118775800	Enhancers	Primary T cells from cord blood	blood
20	chr5:118775400-118787600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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