Variant report

Variant	rs10464693
Chromosome Location	chr7:128178386-128178387
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 94 )
Associated
traits (count: 26 )

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10215560	0.81[EUR][1000 genomes]
rs10215566	0.81[EUR][1000 genomes]
rs10215947	0.81[EUR][1000 genomes]
rs10229874	0.82[EUR][1000 genomes]
rs10237278	0.82[EUR][1000 genomes]
rs10464537	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10464538	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10954193	0.82[EUR][1000 genomes]
rs11979586	0.81[EUR][1000 genomes]
rs12667202	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12670432	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12672443	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12672940	0.84[EUR][1000 genomes]
rs12673060	0.84[EUR][1000 genomes]
rs12673998	0.81[EUR][1000 genomes]
rs13438170	0.82[EUR][1000 genomes]
rs1809082	0.81[EUR][1000 genomes]
rs1970827	0.81[EUR][1000 genomes]
rs2044834	0.81[EUR][1000 genomes]
rs2402907	0.81[EUR][1000 genomes]
rs2443110	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35394926	0.81[EUR][1000 genomes]
rs3857849	0.81[EUR][1000 genomes]
rs3927852	0.81[EUR][1000 genomes]
rs3931943	0.81[EUR][1000 genomes]
rs4077398	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4079001	0.81[EUR][1000 genomes]
rs4079003	0.80[EUR][1000 genomes]
rs4562239	0.82[EUR][1000 genomes]
rs4579449	0.80[EUR][1000 genomes]
rs4728123	0.81[AMR][1000 genomes]
rs4731482	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4731484	0.81[EUR][1000 genomes]
rs4731486	0.82[EUR][1000 genomes]
rs4731488	0.81[EUR][1000 genomes]
rs55860694	0.84[EUR][1000 genomes]
rs55982013	0.82[EUR][1000 genomes]
rs56030011	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56052829	0.82[EUR][1000 genomes]
rs56060467	0.80[EUR][1000 genomes]
rs56111366	0.84[EUR][1000 genomes]
rs56189614	0.83[EUR][1000 genomes]
rs56208431	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56278047	0.82[EUR][1000 genomes]
rs56946745	0.80[EUR][1000 genomes]
rs57226192	0.82[EUR][1000 genomes]
rs57370656	0.81[EUR][1000 genomes]
rs58133562	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58961149	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59066415	0.83[EUR][1000 genomes]
rs59154282	0.83[EUR][1000 genomes]
rs59594227	0.83[EUR][1000 genomes]
rs60473286	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60515997	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60781570	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60804557	0.82[EUR][1000 genomes]
rs61146845	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61312980	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62479751	0.83[EUR][1000 genomes]
rs62479756	0.82[EUR][1000 genomes]
rs62479757	0.82[EUR][1000 genomes]
rs62481868	0.81[EUR][1000 genomes]
rs62481869	0.81[EUR][1000 genomes]
rs62481873	0.81[EUR][1000 genomes]
rs62481883	0.81[EUR][1000 genomes]
rs62481890	0.81[EUR][1000 genomes]
rs62481892	0.81[EUR][1000 genomes]
rs62481895	0.81[EUR][1000 genomes]
rs62481897	0.80[EUR][1000 genomes]
rs62483286	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62483293	0.84[EUR][1000 genomes]
rs62483298	0.81[EUR][1000 genomes]
rs62483302	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62483305	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62483342	0.81[EUR][1000 genomes]
rs62483348	0.81[EUR][1000 genomes]
rs6467185	0.81[EUR][1000 genomes]
rs6467186	0.81[EUR][1000 genomes]
rs6467188	0.82[EUR][1000 genomes]
rs6467189	0.82[EUR][1000 genomes]
rs6467195	0.81[EUR][1000 genomes]
rs6954284	0.82[EUR][1000 genomes]
rs6954404	0.81[EUR][1000 genomes]
rs6969528	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73233862	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7385007	0.82[EUR][1000 genomes]
rs7786336	0.83[EUR][1000 genomes]
rs7792915	0.81[EUR][1000 genomes]
rs7793136	0.81[EUR][1000 genomes]
rs9640850	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9641823	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9641824	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9641826	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9641827	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]

mRNA abundance (count:26)

SNP	Gene	Cis/trans	Tissue	Source
rs10464693	RP11-274B21.4	cis	Stomach	GTEx
rs10464693	RP11-274B21.2	cis	lung	GTEx
rs10464693	RP11-274B21.2	cis	Nerve Tibial	GTEx
rs10464693	RP11-274B21.1	cis	Nerve Tibial	GTEx
rs10464693	RP11-274B21.1	cis	Adipose Subcutaneous	GTEx
rs10464693	RP11-274B21.4	cis	Whole Blood	GTEx
rs10464693	RP11-274B21.2	cis	Adipose Subcutaneous	GTEx
rs10464693	RP11-274B21.2	cis	Muscle Skeletal	GTEx
rs10464693	RP11-274B21.4	cis	Esophagus Muscularis	GTEx
rs10464693	RP11-274B21.1	cis	Artery Aorta	GTEx
rs10464693	RP11-274B21.4	cis	Nerve Tibial	GTEx
rs10464693	RP11-274B21.1	cis	Thyroid	GTEx
rs10464693	RP11-274B21.4	cis	Esophagus Mucosa	GTEx
rs10464693	RP11-274B21.4	cis	Artery Tibial	GTEx
rs10464693	RP11-274B21.1	cis	Skin Sun Exposed Lower leg	GTEx
rs10464693	RP11-274B21.1	cis	Artery Tibial	GTEx
rs10464693	RP11-274B21.9	cis	Esophagus Mucosa	GTEx
rs10464693	RP11-274B21.1	cis	Whole Blood	GTEx
rs10464693	RP11-274B21.4	cis	Skin Sun Exposed Lower leg	GTEx
rs10464693	RP11-274B21.1	cis	lung	GTEx
rs10464693	RP11-274B21.4	cis	Muscle Skeletal	GTEx
rs10464693	RP11-274B21.1	cis	Muscle Skeletal	GTEx
rs10464693	RP11-274B21.4	cis	lung	GTEx
rs10464693	RP11-274B21.10	cis	Whole Blood	GTEx
rs10464693	RP11-274B21.3	cis	Muscle Skeletal	GTEx
rs10464693	RP11-274B21.4	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128172600-128178600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:128172600-128178800	Weak transcription	Esophagus	oesophagus
3	chr7:128172600-128179200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr7:128172600-128179400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:128172600-128179600	Weak transcription	Lung	lung
6	chr7:128172600-128184800	Weak transcription	Spleen	Spleen
7	chr7:128172600-128187600	Weak transcription	Pancreas	Pancrea
8	chr7:128172600-128189800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr7:128172600-128191000	Weak transcription	Ovary	ovary
10	chr7:128172600-128191200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:128172600-128193400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:128172600-128210800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:128172600-128214800	Weak transcription	Gastric	stomach
14	chr7:128172800-128239800	Weak transcription	Small Intestine	intestine
15	chr7:128173000-128178800	Weak transcription	Stomach Mucosa	stomach
16	chr7:128173000-128188000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr7:128173000-128190400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:128173000-128190800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:128173000-128231800	Weak transcription	Colonic Mucosa	Colon
20	chr7:128173000-128231800	Weak transcription	Fetal Kidney	kidney
21	chr7:128173200-128183200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr7:128173400-128188200	Weak transcription	Fetal Brain Male	brain
23	chr7:128173600-128181200	Weak transcription	Fetal Intestine Large	intestine
24	chr7:128173600-128187200	Weak transcription	Brain Anterior Caudate	brain
25	chr7:128173600-128201000	Weak transcription	Psoas Muscle	Psoas
26	chr7:128173600-128214800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:128173800-128178800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr7:128173800-128178800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:128173800-128178800	Weak transcription	Thymus	Thymus
30	chr7:128173800-128179000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr7:128173800-128183000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr7:128173800-128183200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr7:128173800-128183200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr7:128173800-128184800	Weak transcription	Fetal Lung	lung
35	chr7:128173800-128186600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr7:128173800-128186800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr7:128173800-128186800	Weak transcription	Stomach Smooth Muscle	stomach
38	chr7:128173800-128186800	Weak transcription	HMEC	breast
39	chr7:128173800-128186800	Weak transcription	NHDF-Ad	bronchial
40	chr7:128173800-128187000	Weak transcription	Primary B cells from cord blood	blood
41	chr7:128173800-128187400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr7:128173800-128190800	Weak transcription	Brain Substantia Nigra	brain
43	chr7:128173800-128191000	Weak transcription	Brain Angular Gyrus	brain
44	chr7:128173800-128197800	Weak transcription	Right Atrium	heart
45	chr7:128173800-128199800	Weak transcription	Right Ventricle	heart
46	chr7:128173800-128201000	Weak transcription	Brain Germinal Matrix	brain
47	chr7:128173800-128214800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr7:128173800-128234400	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr7:128174000-128178800	Weak transcription	HSMM	muscle
50	chr7:128174000-128179000	Weak transcription	A549	lung

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