Variant report

Variant	rs10467736
Chromosome Location	chr14:25148857-25148858
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:24950446..24951536-chr14:25147799..25148973,31	MCF-7	breast:
2	chr14:25098847..25101531-chr14:25147119..25149675,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10135076	0.82[EUR][1000 genomes]
rs10135223	0.85[EUR][1000 genomes]
rs10467737	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12323930	0.85[EUR][1000 genomes]
rs12878578	0.82[CEU][hapmap]
rs17257110	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs1951590	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1957520	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2025213	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4982984	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982986	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4982987	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7141222	0.85[EUR][1000 genomes]
rs72681039	0.85[EUR][1000 genomes]
rs8009072	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9989226	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv510631	chr14:25045183-25172311	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv901503	chr14:25133186-25172456	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25146800-25149600	Enhancers	Primary T cells from cord blood	blood
2	chr14:25147000-25150200	Enhancers	Primary hematopoietic stem cells	blood
3	chr14:25147200-25150200	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr14:25147400-25149000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr14:25147400-25149000	Enhancers	GM12878-XiMat	blood
6	chr14:25147400-25149200	Enhancers	Primary B cells from peripheral blood	blood
7	chr14:25147400-25150600	Enhancers	Fetal Brain Male	brain
8	chr14:25147400-25150800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr14:25147600-25149000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr14:25147600-25149400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
11	chr14:25147800-25149400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:25147800-25149400	Enhancers	Left Ventricle	heart
13	chr14:25147800-25150400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr14:25147800-25151800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:25148000-25149200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
16	chr14:25148000-25149400	Enhancers	Fetal Heart	heart
17	chr14:25148000-25149400	Enhancers	Thymus	Thymus
18	chr14:25148200-25149200	Enhancers	Pancreas	Pancrea
19	chr14:25148200-25149200	Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr14:25148200-25149400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr14:25148200-25149800	Weak transcription	NHEK	skin
22	chr14:25148200-25150200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:25148200-25150200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr14:25148200-25151400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr14:25148200-25153000	Weak transcription	Psoas Muscle	Psoas
26	chr14:25148400-25149200	Enhancers	Right Atrium	heart
27	chr14:25148400-25149400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr14:25148400-25150200	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr14:25148600-25149000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
30	chr14:25148600-25149000	Flanking Active TSS	Fetal Thymus	thymus
31	chr14:25148800-25150000	Weak transcription	Esophagus	oesophagus
32	chr14:25148800-25150600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr14:25148800-25156000	Weak transcription	K562	blood

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