Variant report

Variant	rs10467973
Chromosome Location	chr15:41216397-41216398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41216012..41217730-chr15:41244330..41246128,2	MCF-7	breast:
2	chr15:41193987..41204234-chr15:41215915..41223506,12	K562	blood:
3	chr15:41207320..41209153-chr15:41215537..41217549,2	K562	blood:
4	chr15:41216351..41218911-chr15:41231824..41234826,3	MCF-7	breast:
5	chr15:41212425..41217996-chr15:41220286..41224266,7	MCF-7	breast:
6	chr15:41197462..41204234-chr15:41215803..41223321,13	K562	blood:

Variant related genes	Relation type
ENSG00000128917	Chromatin interaction
ENSG00000251161	Chromatin interaction
ENSG00000128965	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28393837	1.00[CEU][hapmap]
rs28568593	1.00[AFR][1000 genomes]
rs55805015	0.86[AFR][1000 genomes]
rs56038127	0.80[AFR][1000 genomes]
rs56400389	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv904104	chr15:41149824-41234932	Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
6	esv1819792	chr15:41184722-41234825	Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41211600-41218000	Weak transcription	Right Atrium	heart
2	chr15:41211800-41218200	Weak transcription	Brain Anterior Caudate	brain
3	chr15:41214600-41216600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr15:41214600-41216600	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr15:41214800-41216600	Enhancers	Lung	lung
6	chr15:41214800-41216800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr15:41215200-41216400	Enhancers	Psoas Muscle	Psoas
8	chr15:41215200-41217800	Weak transcription	Liver	Liver
9	chr15:41215200-41218000	Weak transcription	Right Ventricle	heart
10	chr15:41215400-41216600	Enhancers	HSMMtube	muscle
11	chr15:41215400-41216800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr15:41215600-41216600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:41215600-41217400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr15:41215600-41217400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr15:41215800-41216400	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:41215800-41216600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:41215800-41216800	Bivalent Enhancer	Fetal Muscle Leg	muscle
18	chr15:41216000-41216400	Weak transcription	Fetal Intestine Small	intestine
19	chr15:41216000-41216600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:41216200-41216800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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