Variant report

Variant	rs10468685
Chromosome Location	chr18:12821937-12821938
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:12820575..12822658-chr18:12882713..12885581,3	MCF-7	breast:
2	chr18:12820343..12822473-chr18:12882702..12885131,2	K562	blood:
3	chr18:12814040..12815799-chr18:12820457..12822503,2	K562	blood:

Variant related genes	Relation type
ENSG00000175354	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12326700	1.00[AMR][1000 genomes]
rs13380882	1.00[AMR][1000 genomes]
rs13381820	1.00[EUR][1000 genomes]
rs16939851	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs16939913	1.00[EUR][1000 genomes]
rs2542173	1.00[EUR][1000 genomes]
rs28436108	1.00[EUR][1000 genomes]
rs2847263	1.00[EUR][1000 genomes]
rs2847264	1.00[EUR][1000 genomes]
rs28579212	1.00[EUR][1000 genomes]
rs57580816	1.00[EUR][1000 genomes]
rs58839955	1.00[EUR][1000 genomes]
rs59059172	1.00[AMR][1000 genomes]
rs59434054	1.00[EUR][1000 genomes]
rs61320647	1.00[EUR][1000 genomes]
rs7229440	1.00[EUR][1000 genomes]
rs7236539	1.00[EUR][1000 genomes]
rs7240157	1.00[EUR][1000 genomes]
rs73407719	1.00[EUR][1000 genomes]
rs73407722	1.00[EUR][1000 genomes]
rs73407750	1.00[EUR][1000 genomes]
rs73407763	1.00[EUR][1000 genomes]
rs73407884	1.00[EUR][1000 genomes]
rs73416976	1.00[EUR][1000 genomes]
rs73419110	1.00[EUR][1000 genomes]
rs8083404	1.00[EUR][1000 genomes]
rs8087452	1.00[EUR][1000 genomes]
rs8099254	1.00[EUR][1000 genomes]
rs908577	1.00[EUR][1000 genomes]
rs9946422	1.00[EUR][1000 genomes]
rs9951546	1.00[EUR][1000 genomes]
rs9953795	1.00[EUR][1000 genomes]
rs9958518	1.00[EUR][1000 genomes]
rs9965936	1.00[EUR][1000 genomes]
rs9966740	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063125	chr18:12046892-12918251	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	130 gene(s)	inside rSNPs	diseases
2	esv3528039	chr18:12396582-12851293	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	esv3528041	chr18:12396641-12851245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1062014	chr18:12687210-13183383	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
5	nsv543655	chr18:12687210-13183383	Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
6	nsv1064273	chr18:12697601-12828251	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1064844	chr18:12748045-12953235	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases
8	nsv543656	chr18:12748045-12953235	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:12777800-12838200	Weak transcription	Colonic Mucosa	Colon
2	chr18:12790200-12828000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr18:12791400-12837000	Weak transcription	NHDF-Ad	bronchial
4	chr18:12791600-12828000	Weak transcription	HUVEC	blood vessel
5	chr18:12802000-12842400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr18:12806400-12827600	Strong transcription	Dnd41	blood
7	chr18:12806800-12827400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr18:12807200-12826600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr18:12807200-12842400	Weak transcription	Fetal Heart	heart
10	chr18:12808600-12827400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr18:12808800-12827200	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr18:12809000-12828000	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr18:12809000-12828000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr18:12809600-12824600	Weak transcription	Esophagus	oesophagus
15	chr18:12809600-12825200	Weak transcription	Aorta	Aorta
16	chr18:12809600-12828000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr18:12809600-12833200	Weak transcription	HSMM	muscle
18	chr18:12809600-12838200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr18:12809600-12838200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr18:12811600-12828000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr18:12811800-12827400	Weak transcription	Psoas Muscle	Psoas
22	chr18:12812000-12838400	Weak transcription	Right Ventricle	heart
23	chr18:12812600-12822600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr18:12814400-12824400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr18:12814400-12843400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr18:12814600-12824000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr18:12814600-12828200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr18:12814600-12828200	Weak transcription	A549	lung
29	chr18:12815000-12822600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr18:12815000-12824200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr18:12815400-12827200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr18:12816200-12824200	Weak transcription	Fetal Kidney	kidney
33	chr18:12816200-12828000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr18:12816400-12824200	Weak transcription	Gastric	stomach
35	chr18:12816400-12824200	Weak transcription	Pancreas	Pancrea
36	chr18:12816400-12824200	Weak transcription	Hela-S3	cervix
37	chr18:12816400-12824200	Weak transcription	HepG2	liver
38	chr18:12816400-12824600	Weak transcription	Left Ventricle	heart
39	chr18:12816400-12824600	Weak transcription	HSMMtube	muscle
40	chr18:12816400-12824800	Weak transcription	Osteobl	bone
41	chr18:12816400-12827400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr18:12816600-12824000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr18:12816600-12824200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr18:12816600-12824200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr18:12816600-12825400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr18:12817000-12824400	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr18:12817000-12827800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr18:12817200-12822400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr18:12817200-12824200	Weak transcription	K562	blood
50	chr18:12817400-12824200	Weak transcription	Ovary	ovary

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