Variant report

Variant	rs10468770
Chromosome Location	chr18:7601568-7601569
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:7601321..7603533-chr18:7605983..7608690,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28378304	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28637172	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59122883	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61288642	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73383637	0.83[AMR][1000 genomes]
rs73383666	0.83[AMR][1000 genomes]
rs73385360	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73385379	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73385380	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73385383	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2656232	chr18:7111033-7658679	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv532282	chr18:7115075-7608218	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1064597	chr18:7169490-7762738	Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv543636	chr18:7169490-7762738	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1063350	chr18:7215275-7659999	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv534374	chr18:7438812-8412546	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv458016	chr18:7488133-7934001	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv576399	chr18:7488133-7934001	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv2762810	chr18:7492090-7924728	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1062911	chr18:7561991-8088274	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv543637	chr18:7561991-8088274	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv1064345	chr18:7562051-8088274	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv543638	chr18:7562051-8088274	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:7586400-7607600	Weak transcription	Aorta	Aorta
2	chr18:7591600-7603800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr18:7592800-7603400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr18:7596400-7603400	Weak transcription	Colon Smooth Muscle	Colon
5	chr18:7596400-7603400	Weak transcription	Pancreas	Pancrea
6	chr18:7596400-7603600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr18:7598600-7603600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr18:7599400-7601600	Enhancers	Right Atrium	heart
9	chr18:7599400-7601800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr18:7599400-7602600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr18:7599400-7605000	Enhancers	Left Ventricle	heart
12	chr18:7599600-7602200	Enhancers	Lung	lung
13	chr18:7599600-7602200	Enhancers	Right Ventricle	heart
14	chr18:7599600-7602400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr18:7599800-7602200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr18:7599800-7602400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr18:7599800-7602800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr18:7600000-7602200	Strong transcription	A549	lung
19	chr18:7600000-7603400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr18:7600000-7605600	Weak transcription	Ovary	ovary
21	chr18:7600200-7601800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr18:7600200-7601800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr18:7600200-7603400	Weak transcription	Fetal Muscle Leg	muscle
24	chr18:7600200-7603800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr18:7600200-7607400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr18:7600400-7601600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr18:7600400-7601600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr18:7600400-7601800	Enhancers	Primary hematopoietic stem cells	blood
29	chr18:7600400-7603600	Weak transcription	Small Intestine	intestine
30	chr18:7600400-7607200	Weak transcription	Fetal Brain Female	brain
31	chr18:7600600-7601600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr18:7600600-7601800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr18:7600600-7602200	Enhancers	Spleen	Spleen
34	chr18:7600600-7602600	Enhancers	HMEC	breast
35	chr18:7600600-7603800	Weak transcription	Fetal Brain Male	brain
36	chr18:7600600-7603800	Weak transcription	Fetal Lung	lung
37	chr18:7600800-7601600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr18:7600800-7601600	Enhancers	HUVEC	blood vessel
39	chr18:7600800-7601600	Enhancers	NHDF-Ad	bronchial
40	chr18:7600800-7601800	Enhancers	Muscle Satellite Cultured Cells	--
41	chr18:7600800-7601800	Weak transcription	Fetal Heart	heart
42	chr18:7600800-7602800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr18:7600800-7603200	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr18:7600800-7603200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr18:7600800-7603400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr18:7600800-7603600	Weak transcription	Brain Anterior Caudate	brain
47	chr18:7600800-7607200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr18:7600800-7607800	Weak transcription	Adipose Nuclei	Adipose
49	chr18:7601000-7601800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr18:7601000-7601800	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links