Variant report

Variant	rs10469697
Chromosome Location	chr2:169599756-169599757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:169599528..169602506-chr2:169604602..169606605,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12474792	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13009213	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4668102	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915920	chr2:168851960-169696591	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:169565200-169622800	Weak transcription	Liver	Liver
2	chr2:169577600-169606400	Weak transcription	Thymus	Thymus
3	chr2:169577600-169613600	Weak transcription	Fetal Kidney	kidney
4	chr2:169579600-169606000	Weak transcription	Pancreas	Pancrea
5	chr2:169579600-169610400	Weak transcription	HepG2	liver
6	chr2:169579600-169630200	Weak transcription	Aorta	Aorta
7	chr2:169579600-169630600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:169580400-169610600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr2:169580800-169604200	Weak transcription	Fetal Thymus	thymus
10	chr2:169580800-169610600	Weak transcription	Primary B cells from cord blood	blood
11	chr2:169581000-169612000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:169581200-169606400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr2:169581600-169601200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr2:169581600-169610400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr2:169583800-169613000	Weak transcription	Primary hematopoietic stem cells	blood
16	chr2:169586000-169627600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:169586200-169607600	Weak transcription	Fetal Stomach	stomach
18	chr2:169586600-169606400	Weak transcription	GM12878-XiMat	blood
19	chr2:169587200-169606200	Weak transcription	Right Atrium	heart
20	chr2:169587800-169623200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr2:169588400-169600800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr2:169588600-169602600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr2:169588600-169605400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr2:169590600-169600800	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr2:169591000-169605000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr2:169591200-169604600	Weak transcription	Fetal Muscle Leg	muscle
27	chr2:169591200-169604600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr2:169591400-169605000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr2:169592200-169605000	Weak transcription	Right Ventricle	heart
30	chr2:169593400-169612400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr2:169593600-169601000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr2:169593800-169604800	Weak transcription	Brain Angular Gyrus	brain
33	chr2:169594000-169611000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:169594400-169607600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr2:169594800-169605200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr2:169595000-169608400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr2:169595000-169610600	Weak transcription	HMEC	breast
38	chr2:169595200-169621000	Weak transcription	Brain Germinal Matrix	brain
39	chr2:169595200-169622800	Weak transcription	NHEK	skin
40	chr2:169595400-169604400	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr2:169595400-169604400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr2:169595400-169604600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr2:169596600-169602200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr2:169597000-169599800	Enhancers	Fetal Heart	heart
45	chr2:169597200-169608600	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr2:169597200-169635800	Weak transcription	Ovary	ovary
47	chr2:169597600-169613600	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr2:169598600-169622800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr2:169599200-169604600	Weak transcription	Gastric	stomach
50	chr2:169599200-169607400	Weak transcription	Fetal Intestine Large	intestine

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