Variant report

Variant	rs1047054
Chromosome Location	chrX:55172537-55172538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:55172107..55173217-chrX:55185088..55186125,3	MCF-7	breast:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv6551	chrX:55172471-55185657	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55167600-55187000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chrX:55168800-55172600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chrX:55169400-55175400	Weak transcription	Fetal Intestine Large	intestine
4	chrX:55169400-55186600	Weak transcription	Fetal Intestine Small	intestine
5	chrX:55169400-55186800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chrX:55170600-55172600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chrX:55170800-55186200	Weak transcription	A549	lung
8	chrX:55171400-55186800	Weak transcription	Stomach Mucosa	stomach
9	chrX:55172200-55172800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
10	chrX:55172400-55172600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
11	chrX:55172400-55172600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chrX:55172400-55172600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
13	chrX:55172400-55172600	ZNF genes & repeats	Brain Germinal Matrix	brain
14	chrX:55172400-55172600	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
15	chrX:55172400-55172600	Bivalent Enhancer	Small Intestine	intestine
16	chrX:55172400-55172600	Flanking Bivalent TSS/Enh	HMEC	breast
17	chrX:55172400-55172800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
18	chrX:55172400-55172800	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chrX:55172400-55172800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chrX:55172400-55172800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chrX:55172400-55172800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chrX:55172400-55172800	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
23	chrX:55172400-55172800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chrX:55172400-55172800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
25	chrX:55172400-55172800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
26	chrX:55172400-55172800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
27	chrX:55172400-55172800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
28	chrX:55172400-55172800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
29	chrX:55172400-55172800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
30	chrX:55172400-55172800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chrX:55172400-55172800	ZNF genes & repeats	Primary B cells from cord blood	blood
32	chrX:55172400-55172800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
33	chrX:55172400-55172800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
34	chrX:55172400-55172800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
35	chrX:55172400-55172800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
36	chrX:55172400-55172800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
37	chrX:55172400-55172800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
38	chrX:55172400-55172800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
39	chrX:55172400-55172800	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
40	chrX:55172400-55172800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chrX:55172400-55172800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chrX:55172400-55172800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chrX:55172400-55172800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
44	chrX:55172400-55172800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
45	chrX:55172400-55172800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chrX:55172400-55172800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chrX:55172400-55172800	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
48	chrX:55172400-55172800	ZNF genes & repeats	Aorta	Aorta
49	chrX:55172400-55172800	ZNF genes & repeats	Liver	Liver
50	chrX:55172400-55172800	ZNF genes & repeats	Brain Angular Gyrus	brain

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