Variant report

Variant	rs10470642
Chromosome Location	chr3:19436587-19436588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13061887	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs1348230	0.81[TSI][hapmap]
rs1867001	0.90[LWK][hapmap];0.83[TSI][hapmap];0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2197126	1.00[YRI][hapmap]
rs4142701	1.00[ASW][hapmap];0.87[CEU][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];0.87[EUR][1000 genomes]
rs4857959	0.90[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap]
rs6549944	1.00[YRI][hapmap]
rs6549948	0.81[TSI][hapmap]
rs6771369	0.81[EUR][1000 genomes]
rs6779105	1.00[ASW][hapmap];0.87[CEU][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.87[EUR][1000 genomes]
rs6799035	0.83[EUR][1000 genomes]
rs6808183	0.88[EUR][1000 genomes]
rs7619551	0.87[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7630677	0.87[CEU][hapmap];0.84[GIH][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs9310596	0.90[LWK][hapmap];0.86[MEX][hapmap]
rs9809140	0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517847	chr3:18845347-19483695	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010123	chr3:18990307-19989504	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1004602	chr3:19031671-19930052	Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv536511	chr3:19031671-19930052	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv948636	chr3:19335802-19856585	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv589855	chr3:19409153-19512074	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:19430200-19440800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr3:19435200-19449000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:19435600-19441000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:19435800-19436600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:19435800-19438800	Enhancers	Primary B cells from peripheral blood	blood
6	chr3:19436200-19438000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:19436400-19436800	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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