Variant report

Variant	rs10472683
Chromosome Location	chr5:29212817-29212818
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs10037010	0.91[ASN][1000 genomes]
rs10037061	0.91[ASN][1000 genomes]
rs10038700	0.91[ASN][1000 genomes]
rs10039602	0.91[ASN][1000 genomes]
rs10039668	0.91[ASN][1000 genomes]
rs10039689	0.91[ASN][1000 genomes]
rs10039720	0.91[ASN][1000 genomes]
rs10040911	0.91[ASN][1000 genomes]
rs10042518	0.91[ASN][1000 genomes]
rs10045742	0.91[ASN][1000 genomes]
rs10050492	0.91[ASN][1000 genomes]
rs10051008	0.88[ASN][1000 genomes]
rs10056451	0.91[ASN][1000 genomes]
rs10056682	0.91[ASN][1000 genomes]
rs10057831	0.91[ASN][1000 genomes]
rs10057922	0.91[ASN][1000 genomes]
rs10058093	0.91[ASN][1000 genomes]
rs10058284	0.91[ASN][1000 genomes]
rs10060554	0.88[ASN][1000 genomes]
rs10064419	0.88[ASN][1000 genomes]
rs10064605	0.91[ASN][1000 genomes]
rs10064724	0.91[ASN][1000 genomes]
rs10064739	0.91[ASN][1000 genomes]
rs10064857	0.91[ASN][1000 genomes]
rs10064882	0.91[ASN][1000 genomes]
rs10064929	0.91[ASN][1000 genomes]
rs10064947	0.91[ASN][1000 genomes]
rs10065134	0.91[ASN][1000 genomes]
rs10066074	0.91[ASN][1000 genomes]
rs10066078	0.91[ASN][1000 genomes]
rs10066277	0.91[ASN][1000 genomes]
rs10068481	0.91[ASN][1000 genomes]
rs10072535	0.91[ASN][1000 genomes]
rs10072665	0.88[ASN][1000 genomes]
rs10072954	0.91[ASN][1000 genomes]
rs10072999	0.91[ASN][1000 genomes]
rs10073201	0.91[ASN][1000 genomes]
rs10074755	0.91[ASN][1000 genomes]
rs10079566	0.88[ASN][1000 genomes]
rs10079924	0.91[ASN][1000 genomes]
rs10080202	0.91[ASN][1000 genomes]
rs1031855	0.88[ASN][1000 genomes]
rs10472151	0.91[ASN][1000 genomes]
rs10472152	0.86[ASN][1000 genomes]
rs10472154	0.91[ASN][1000 genomes]
rs10472669	0.88[ASN][1000 genomes]
rs10472678	0.91[ASN][1000 genomes]
rs10472680	0.91[ASN][1000 genomes]
rs10472681	0.91[ASN][1000 genomes]
rs10472682	0.88[ASN][1000 genomes]
rs13157869	0.87[ASN][1000 genomes]
rs13164231	0.91[ASN][1000 genomes]
rs13182294	0.91[ASN][1000 genomes]
rs13356879	0.91[ASN][1000 genomes]
rs13359197	0.91[ASN][1000 genomes]
rs1478863	0.91[ASN][1000 genomes]
rs1478865	0.88[ASN][1000 genomes]
rs1478866	0.88[ASN][1000 genomes]
rs28637428	0.91[ASN][1000 genomes]
rs309670	0.81[ASN][1000 genomes]
rs34302105	0.91[ASN][1000 genomes]
rs34426391	0.91[ASN][1000 genomes]
rs34687289	0.91[ASN][1000 genomes]
rs34979719	0.91[ASN][1000 genomes]
rs35746880	0.91[ASN][1000 genomes]
rs35977446	0.84[ASN][1000 genomes]
rs4130798	0.91[ASN][1000 genomes]
rs4130799	0.91[ASN][1000 genomes]
rs4130800	0.91[ASN][1000 genomes]
rs4354055	0.88[ASN][1000 genomes]
rs4374768	0.83[ASN][1000 genomes]
rs4389701	0.88[ASN][1000 genomes]
rs4398647	0.91[ASN][1000 genomes]
rs4484450	0.88[ASN][1000 genomes]
rs4568373	0.88[ASN][1000 genomes]
rs4587086	0.88[ASN][1000 genomes]
rs4590191	0.88[ASN][1000 genomes]
rs4593276	0.87[ASN][1000 genomes]
rs4631192	0.91[ASN][1000 genomes]
rs4867164	0.88[ASN][1000 genomes]
rs62352828	0.91[ASN][1000 genomes]
rs62352850	0.91[ASN][1000 genomes]
rs62352851	0.91[ASN][1000 genomes]
rs6450671	0.88[ASN][1000 genomes]
rs6450673	0.91[ASN][1000 genomes]
rs6450674	0.88[ASN][1000 genomes]
rs6450675	0.88[ASN][1000 genomes]
rs6866060	0.91[ASN][1000 genomes]
rs6867116	0.88[ASN][1000 genomes]
rs6872678	0.84[EUR][1000 genomes]
rs6873017	0.88[ASN][1000 genomes]
rs6873888	0.91[ASN][1000 genomes]
rs6876144	0.88[ASN][1000 genomes]
rs6885342	0.91[ASN][1000 genomes]
rs6895131	0.88[ASN][1000 genomes]
rs7444084	0.91[ASN][1000 genomes]
rs7446320	0.88[ASN][1000 genomes]
rs7714444	0.91[ASN][1000 genomes]
rs7714882	0.91[ASN][1000 genomes]
rs7715935	0.91[ASN][1000 genomes]
rs7718672	0.84[ASN][1000 genomes]
rs7722678	0.91[ASN][1000 genomes]
rs7731764	0.91[ASN][1000 genomes]
rs7732730	0.88[ASN][1000 genomes]
rs7732750	0.91[ASN][1000 genomes]
rs7732811	0.91[ASN][1000 genomes]
rs7733592	0.81[ASN][1000 genomes]
rs9292300	0.88[ASN][1000 genomes]
rs9292307	0.91[ASN][1000 genomes]
rs9292311	0.91[ASN][1000 genomes]
rs9292312	0.91[ASN][1000 genomes]
rs9292314	0.91[ASN][1000 genomes]
rs9986176	0.91[ASN][1000 genomes]
rs9986231	0.91[ASN][1000 genomes]
rs9986285	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023990	chr5:28917253-29220447	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3528360	chr5:29069255-29548659	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	esv3528361	chr5:29069255-29548659	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	nsv1031329	chr5:29177677-29760923	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv537713	chr5:29177677-29760923	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv880414	chr5:29194872-29495564	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29208600-29213800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:29210600-29214200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr5:29211200-29214200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:29211200-29214200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:29212400-29213200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:29212600-29213800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:29212800-29213000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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