Variant report

Variant	rs10473212
Chromosome Location	chr5:40663657-40663658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10035697	0.88[AMR][1000 genomes]
rs10038251	0.90[AMR][1000 genomes]
rs10038367	0.89[AMR][1000 genomes]
rs10043891	0.89[AMR][1000 genomes]
rs10044538	0.89[AMR][1000 genomes]
rs10053469	0.89[AMR][1000 genomes]
rs10056173	0.91[AMR][1000 genomes]
rs10057182	0.89[AMR][1000 genomes]
rs10065482	0.89[AMR][1000 genomes]
rs10066459	0.82[AMR][1000 genomes]
rs10071870	0.89[AMR][1000 genomes]
rs10074117	0.83[AMR][1000 genomes]
rs10473210	0.91[AMR][1000 genomes]
rs10473211	0.89[AMR][1000 genomes]
rs10473214	0.86[AMR][1000 genomes]
rs10473216	0.89[AMR][1000 genomes]
rs10941522	0.87[AMR][1000 genomes]
rs11744569	0.89[AMR][1000 genomes]
rs11949581	0.89[AMR][1000 genomes]
rs12188666	0.89[AMR][1000 genomes]
rs12513529	0.89[AMR][1000 genomes]
rs1553578	0.84[AMR][1000 genomes]
rs1553579	0.86[AMR][1000 genomes]
rs35693860	0.87[AMR][1000 genomes]
rs4599576	0.84[AMR][1000 genomes]
rs4957334	0.90[AMR][1000 genomes]
rs4957336	0.89[AMR][1000 genomes]
rs4957337	0.89[AMR][1000 genomes]
rs4957338	0.89[AMR][1000 genomes]
rs4957339	0.89[AMR][1000 genomes]
rs62356460	0.92[AMR][1000 genomes]
rs62356461	0.89[AMR][1000 genomes]
rs62358056	0.87[AMR][1000 genomes]
rs62358796	0.89[AMR][1000 genomes]
rs62358800	0.89[AMR][1000 genomes]
rs6884507	0.81[AMR][1000 genomes]
rs72747928	0.89[AMR][1000 genomes]
rs72747930	0.89[AMR][1000 genomes]
rs72747940	0.91[AMR][1000 genomes]
rs9292784	0.89[AMR][1000 genomes]
rs9292785	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880993	chr5:40521648-40682550	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases
2	nsv880539	chr5:40662257-40713645	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10473212	RPL37	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40655600-40669600	Weak transcription	Thymus	Thymus
2	chr5:40658600-40665600	Weak transcription	Dnd41	blood
3	chr5:40658800-40668800	Weak transcription	Primary T cells from cord blood	blood
4	chr5:40661200-40668800	Weak transcription	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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